Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5818
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   4.5  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
            Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = +1

Query: 463  DAFTLTRPSINSKTNLITYVDVITRTNNSD*QCYLEDVA*KYMTPVGLASDPIRRGLIHL 642
            D FTL R ++ SKTN     D +  +  S   C    V  K M  V + ++ ++      
Sbjct: 804  DVFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANSVN-KLMKHVMMGNEMMKYPRSES 862

Query: 643  YKQ*LSKNRWTNFPAQP 693
            +K    K+ W  F   P
Sbjct: 863  FKM-FKKSHWRYFWINP 878


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 610 MRVQLESYIFKPRLPN-NIASQNYWS 536
           M++  +SYIF P LP  N A   +WS
Sbjct: 27  MKMIAQSYIFTPTLPGVNKAPPEFWS 52


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 698 PQGWAGKFVHLFLLSYCLY 642
           P+ WA K V L  L YC Y
Sbjct: 66  PEYWAFKLVELLSLFYCAY 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,047
Number of Sequences: 5004
Number of extensions: 46161
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)