Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5818
         (702 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008869-1|AAH08869.1|  520|Homo sapiens FLJ12886 protein protein.     31   5.3  
AK022948-1|BAB14323.1|  495|Homo sapiens protein ( Homo sapiens ...    31   5.3  
AC004780-1|AAC17932.1|  528|Homo sapiens F17127_1 protein.             31   5.3  

>BC008869-1|AAH08869.1|  520|Homo sapiens FLJ12886 protein protein.
          Length = 520

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = -3

Query: 697 PKAGPGSSSTYFCLVIAYTGE*A-PAVLDRMRVQLESYIFKPRLPNNIASQNYW 539
           P+AGPG SS  F L+  Y G  +  +++ ++R Q+ S + +P+L + I ++  W
Sbjct: 444 PRAGPG-SSPLFSLLPGYRGHPSFQSLVSKLRSQVMS-MARPQLSHTILTEKNW 495


>AK022948-1|BAB14323.1|  495|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12886 fis, clone NT2RP2004041, weakly similar to
           SYNAPSINS IA AND IB. ).
          Length = 495

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = -3

Query: 697 PKAGPGSSSTYFCLVIAYTGE*A-PAVLDRMRVQLESYIFKPRLPNNIASQNYW 539
           P+AGPG SS  F L+  Y G  +  +++ ++R Q+ S + +P+L + I ++  W
Sbjct: 444 PRAGPG-SSPLFSLLPGYRGHPSFQSLVSKLRSQVMS-MARPQLSHTILTEKNW 495


>AC004780-1|AAC17932.1|  528|Homo sapiens F17127_1 protein.
          Length = 528

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = -3

Query: 697 PKAGPGSSSTYFCLVIAYTGE*A-PAVLDRMRVQLESYIFKPRLPNNIASQNYW 539
           P+AGPG SS  F L+  Y G  +  +++ ++R Q+ S + +P+L + I ++  W
Sbjct: 452 PRAGPG-SSPLFSLLPGYRGHPSFQSLVSKLRSQVMS-MARPQLSHTILTEKNW 503


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,728,611
Number of Sequences: 237096
Number of extensions: 1485644
Number of successful extensions: 1564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)