Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5817
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    29   0.71 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   2.9  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.8  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   5.0  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   8.8  

>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -3

Query: 485 GGRRAE-FKDHEYGTRHRRGIRRSETTRAPQHTAATQSQSNT 363
           GG R+  F    +G  H R       T APQHT  T   S T
Sbjct: 80  GGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTILTPRLSAT 121


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -1

Query: 373 NQIQDSEGDSREDATNGNTTSESQQKRKISIDIMXXXXXXXXXXXXENHVDNDDLSD 203
           +Q  DS   +   A+NG+ T  S Q   + IDI             EN  + D+++D
Sbjct: 536 SQSTDSLSKNDTTASNGSMTPSSSQNNSVIIDIPRSHFDNAGEVCLENLAEPDEIAD 592


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 379 NHNQIQDSEGDSREDATNGNTTSESQQK 296
           N + I +S+  S+ED  +  TTS S++K
Sbjct: 233 NESAICESQASSKEDERSDKTTSSSKKK 260


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -3

Query: 593  ISRPGQTMRICFRNTMKSLELEYFPTRIRLRTE 495
            ISR  +++ +C R  ++S++L+ +   IR   +
Sbjct: 1186 ISRKKESLELCLRMNIESIDLQEYAPNIRFTAQ 1218


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 478 VEPNSKITNTERDIAAEYAEAKRRGPLNIPPLLNHNQIQD 359
           V+ N+  T  +  I  + AEA+ +G    PPL  H++ ++
Sbjct: 223 VKVNADATEEDEKIQKDKAEAESKGLPYTPPLSLHDKARE 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,914
Number of Sequences: 5004
Number of extensions: 31192
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)