Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5817
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0526 - 20032206-20033106,20034853-20035181                       29   2.2  
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113...    29   2.2  
06_01_0657 + 4767803-4768114,4768394-4768471,4768763-4768786           29   3.9  

>12_02_0526 - 20032206-20033106,20034853-20035181
          Length = 409

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 406 GPLNIPPLLNHNQIQDSEGDSREDATNGNTTS 311
           G  ++PPLL+H  I D + D   + T  NTT+
Sbjct: 288 GGASVPPLLDHQTILDDD-DDHPNKTGSNTTA 318


>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
            16611409-16611690,16611811-16612294,16612791-16612929,
            16613138-16613243,16613396-16613562,16613632-16613707,
            16614173-16614321,16614813-16614874,16615232-16615335,
            16616856-16616950,16617046-16617136,16617785-16617922
          Length = 997

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 542  SLELEYFPTRIRLRTEHRHGGRRAEFKDHEYGTRHRRGIRRS 417
            S + +Y   + R +  HR      +  DHEY  RH+   RRS
Sbjct: 941  SSDSQYTKRKHREKRHHRTRNPDTDSSDHEYEERHKSSSRRS 982


>06_01_0657 + 4767803-4768114,4768394-4768471,4768763-4768786
          Length = 137

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 425 RRSETTRAPQHTAATQSQSNTRF*RGQQRGCDKWEHDERKSTE 297
           R+ E  R  Q        S  +  +G++RGC+K++ D RK  E
Sbjct: 47  RKEERGRCLQRERKEACGSENKKEKGRERGCEKFKVDGRKKGE 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,986,953
Number of Sequences: 37544
Number of extensions: 199952
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)