Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5817
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88170-8|AAB42244.1|  345|Caenorhabditis elegans Serpentine rece...    29   2.7  
AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical ...    28   6.1  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    28   6.1  
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   8.1  
AF003151-20|AAK18920.2|  251|Caenorhabditis elegans Hypothetical...    27   8.1  

>U88170-8|AAB42244.1|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein49 protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 458 DL*IRLDGLHGGALFVTEFALGSIRALTISLYSGNR 565
           D+  +++G+H   L +  F LGS+ A TI L  GN+
Sbjct: 144 DIFYKINGVHRLILGIFNFLLGSLGAWTIFLQDGNQ 179


>AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical
           protein K11D12.6 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 389 AATQSQSNTRF*RGQQRGCDKWEHDERKSTET*NFNRHHGGDRTGI 252
           A T S  NT    G  + C K EHDE+ +    N+  HHG +  G+
Sbjct: 82  ANTPSTLNT----GGAKNCGKEEHDEKCAEPNKNY-CHHGPNNNGV 122


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 497 EHRHGGRRAEFKDHEYGTRHRRGIR-RSETTRAPQHT 390
           +HRH   R E ++H     HRR  R RSE +   + +
Sbjct: 293 DHRHRDHRGEHREHREHKEHRRDDRHRSERSERSERS 329


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -1

Query: 466 SKITNTERDIAAEYAEAKRRGPLNIPPLLNHNQIQDSEGDSREDATNGNTTSESQQKRK 290
           S+  N++ D+A E AE+         P+L +      E  S+ D TN + + +S++  +
Sbjct: 475 SECENSDEDVADEEAESSEASVTPPVPVLENGDNGAIEKSSQIDRTNSHFSEKSRKSEE 533


>AF003151-20|AAK18920.2|  251|Caenorhabditis elegans Hypothetical
           protein D1007.16 protein.
          Length = 251

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 361 DSEGDSREDATNGNTTSESQQKRKISIDIM 272
           DS+G S  D +NG+++ +  +  KI ++ M
Sbjct: 165 DSDGSSDSDKSNGDSSDDEDESEKILLEEM 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,573,866
Number of Sequences: 27780
Number of extensions: 177275
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)