Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5816
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   165   2e-41
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   160   7e-40
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    54   6e-08
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    48   6e-06
AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation...    27   7.2  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  165 bits (401), Expect = 2e-41
 Identities = 76/160 (47%), Positives = 104/160 (65%)
 Frame = +1

Query: 1   ILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVVI 180
           +L+KYRPE+                         RPNT+R G NT+T+LVE ++AQLV+I
Sbjct: 99  LLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLI 158

Query: 181 AHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSK 360
           AHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V RKT   +AL +V   D+++ +K
Sbjct: 159 AHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNK 218

Query: 361 VVEAIKTNFNERYEELRKHWGGGVLGNKSTPASLN*RKLR 480
           +VE +  NF+ER+EE+RKHWGGGV+  KS    L   + R
Sbjct: 219 LVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERAR 258


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  160 bits (388), Expect = 7e-40
 Identities = 70/126 (55%), Positives = 95/126 (75%)
 Frame = +1

Query: 103 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 282
           RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172

Query: 283 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSTPASL 462
            +V RKT   +AL +V   D+++ +K+VE +  NF+ER+EE+RKHWGGGV+  KS    L
Sbjct: 173 TVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKL 232

Query: 463 N*RKLR 480
              + R
Sbjct: 233 KIERAR 238


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +1

Query: 115 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 288
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94

Query: 289 VHRKTCTCLALTNVESGDRASFSKVVEAIK 378
           V R         N  S  ++   K+ E ++
Sbjct: 95  VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 20/89 (22%), Positives = 44/89 (49%)
 Frame = +1

Query: 112 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 291
           T+R G   V K + + +  + ++A +V PI++   +P +C +  +PY  +  + +LG  V
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127

Query: 292 HRKTCTCLALTNVESGDRASFSKVVEAIK 378
             +  + L         +  + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156


>AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation
           defective protein 1 protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 377 LMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPI 237
           L+  T  E   +S D  F     V V   TS+P +D P T+Q+  P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,362,691
Number of Sequences: 27780
Number of extensions: 179463
Number of successful extensions: 512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)