Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5813
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    29   0.81 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    28   1.1  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    27   2.5  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    27   2.5  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   5.7  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   9.9  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   9.9  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   9.9  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    25   9.9  

>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 350 DLSSNVSKRLQYSTNAYSGESRFNIKLHQTCTRLSQIF 463
           DL SN        T  +S +SRF+ K+H   T  SQ++
Sbjct: 300 DLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY 337


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
 Frame = +3

Query: 204  SAAILDLVEGIVELDIQTRPNLVRPSRGTASSGTFALYLARHNRLLKVVTFRAMCPKDSN 383
            S AI + +  +++    ++  +V   RG++S G F     +HNR  + +   A     + 
Sbjct: 905  SIAITEAIARLIKAATASQAEIVAQGRGSSSRGAF---YKKHNRWTEGLISAAKAVARAT 961

Query: 384  TLRMHIVESLVLTLSSIRHAPDYLKYFSLSSHE--GATLNLSSFVSSIRFHL 533
            T  +   + +V   SS  H        S ++ +   A+   ++F S ++ HL
Sbjct: 962  TTLIETADGVVNGTSSFEHLIVACNGVSAATAQLVAASRVKANFASKVQDHL 1013


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 141 SSLLRVVTPSLHQPLLYNRPLSAAILDL 224
           SS+   +  SLH   +Y+RPL   ILD+
Sbjct: 20  SSVTTQLALSLHDSKVYSRPLKTGILDI 47


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 450 YLKYFSLSSHEGATL-NLSSFVSSIRFH 530
           YLK    +S  GA L N  SF+SS+ FH
Sbjct: 118 YLKLHRPASRAGAPLINAKSFISSLTFH 145


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 165 PSLHQPLLYNRPLSAAILDLVEGIVELDIQTRPNLVRPS 281
           PS++     + P      DL +G V+L +   P+L RPS
Sbjct: 39  PSVYDHARIDNPSGDVNNDLSKGFVDLKVYRVPDLSRPS 77


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = -1

Query: 281 RWSDQIRSCLDIKL 240
           +WSD ++SCLD+++
Sbjct: 332 QWSDLLKSCLDLRV 345


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 90  RTLAKFPLNMLLLVASFSSLLRVVTPSLHQPLLYNRPL-SAAILDLVEG 233
           R +AK P N+   V      L  +T  L   L YN  L S A L L+ G
Sbjct: 312 RAVAKLPQNLQPFVFMIIQYLYSITTMLPCSLWYNNKLYSTAFLALIFG 360


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 357 RAMCPKDSNTLRMHIVESLVLTLSSIR-HAPDYLKYF 464
           R  CPK  +TL    + SL  TLS +      +L+YF
Sbjct: 137 RPKCPKPGSTLYERFIPSLNETLSFVSLDIEQHLQYF 173


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 368 THCSKGHDLEQPIVTGKIEGKRPRGCSPTRWSDQIRSCLDIKLDDALH 225
           THCS+   L+  ++       +P  CS ++ + +  +  D+KLD+ LH
Sbjct: 42  THCSQSELLQ--LIEQISLLLQPVRCSASKVTSKYLTTGDVKLDETLH 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,835
Number of Sequences: 5004
Number of extensions: 60710
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)