Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5813
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025723-13|AAK29939.1| 286|Caenorhabditis elegans Hypothetical... 31 0.75
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF016442-6|AAB65914.1| 120|Caenorhabditis elegans Hypothetical ... 29 2.3
U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical pr... 28 5.3
U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set (trithorax/... 28 6.9
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 28 6.9
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 28 6.9
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 28 6.9
Z81533-7|CAB04330.1| 290|Caenorhabditis elegans Hypothetical pr... 27 9.2
U41272-2|AAA82447.1| 143|Caenorhabditis elegans Hypothetical pr... 27 9.2
>AC025723-13|AAK29939.1| 286|Caenorhabditis elegans Hypothetical
protein Y54F10AM.11 protein.
Length = 286
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = -3
Query: 387 EYWSLLDTLLERSRP*AADCDGQDRGQTSQRMQSHEMVGPNSVLSGYQARRCPPRGQGSQ 208
++W+L D LLE + ADC + + ++ SH M+ + P G G+Q
Sbjct: 122 KFWNLFDKLLETLQS-EADCQQVMKMRFPPKLASHSMMALCRRAAALAKEAAKPEGAGAQ 180
Query: 207 QIEDDCIR 184
E++ R
Sbjct: 181 ITEEELDR 188
>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
protein F31B12.2 protein.
Length = 1089
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = -3
Query: 231 PPRGQGSQQIEDDCIREVDAARESRPSVMRRTTQRGGACLKEIWQES*AVGRGSGHASGF 52
P GSQQ EDD I E A SR + R G LK + + + V R S H S
Sbjct: 335 PSAKSGSQQNEDDYICETCATPRSRSTFSRSAVSVEGVLLKVLAEVAELV-RQSQHLSAS 393
Query: 51 ADVLE 37
+ E
Sbjct: 394 EPITE 398
>AF016442-6|AAB65914.1| 120|Caenorhabditis elegans Hypothetical
protein K12B6.6 protein.
Length = 120
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 246 DIQTRPNLVRPSRGTASSGTFALYLARHNRLLKVVTFRAMCPKDSNTLRMHIVESLVLT 422
DIQ NL+R S+ + S F L+ R N + V + + LR H+++ +LT
Sbjct: 56 DIQININLIRGSKMVSKSFQFRLHFLRVNLVCAVTFVTDIHYAINQILREHMIQYTLLT 114
>U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical
protein C30B5.5 protein.
Length = 790
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 303 TFALYLARHNRLLKVVTFRAMCPKDSNTLRMHIVESLVLTLSSIRHAPDYLKYFSL 470
T YLA +RL+ VT CP SN +S +L S++ P Y + +SL
Sbjct: 133 TIERYLAEFSRLIFQVTVNPSCPDGSNW------QSYILLPSAMASNPIYQQVYSL 182
>U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
b protein.
Length = 739
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 307 LPSILPVTIGCSRS*PFEQCVQK 375
L ++PV GCSR+ P+E+ K
Sbjct: 512 LDGVIPVAAGCSRARPYEKMTMK 534
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 307 LPSILPVTIGCSRS*PFEQCVQK 375
L ++PV GCSR+ P+E+ K
Sbjct: 1283 LDGVIPVAAGCSRARPYEKMTMK 1305
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 307 LPSILPVTIGCSRS*PFEQCVQK 375
L ++PV GCSR+ P+E+ K
Sbjct: 1280 LDGVIPVAAGCSRARPYEKMTMK 1302
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 308 KRPRGCSPTRWSDQIRSCLDIKLDDALHEVK 216
KRP G P RW+D +R ++ DA +VK
Sbjct: 150 KRPVGRPPMRWNDSLRK--EVTTRDAFGQVK 178
>Z81533-7|CAB04330.1| 290|Caenorhabditis elegans Hypothetical
protein F36G9.11 protein.
Length = 290
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 44 TSAKPDAWPEPLPTA*DSCQISFKHAPPRCVVLLITEGRDSLAASTSLIQSSSIC 208
T + P P+PLP A + +SFK VL+ +G D+ A S + ++ IC
Sbjct: 98 TLSAPLPTPKPLPPACEKEWLSFKRKSELWCVLVGNQGADNHAFSQA--EAEKIC 150
>U41272-2|AAA82447.1| 143|Caenorhabditis elegans Hypothetical
protein T03G11.5 protein.
Length = 143
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 77 LPTA*DSCQISFKHAPPRCVVLLITEGRDSLAASTSLIQSSS 202
+ T+ D C+ KH P +C L++ +LA + ++S
Sbjct: 55 IETSSDPCECEVKHCPQKCFTALVSGTTTALATTRPTTTATS 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,264
Number of Sequences: 27780
Number of extensions: 341307
Number of successful extensions: 814
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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