Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5812
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    25   6.6  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   8.7  

>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 221 FRTNVHLFRKGILYKYIRALKLSCTHSAIIYVKYNVDNVGR 99
           +R  VH     I+ +YIR L      S I  +K N DN+ R
Sbjct: 356 YRLCVHPIANFIMQRYIRRLGRKEIGSVIDELKKNTDNIIR 396


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 194 KGILYKYIRALKLSCTHSAIIYVKYNVDNVGRLRVRSEKS 75
           +GIL +YI   + S  +   + V +N D V    V  +KS
Sbjct: 261 QGILDRYITCCQFSAANPNELLVSWNSDYVYLFHVHEDKS 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,107
Number of Sequences: 5004
Number of extensions: 48030
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)