Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5811
(390 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 29 0.34
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 27 0.77
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 1.8
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 25 3.1
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 25 5.5
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 5.5
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 24 7.2
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 24 9.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 24 9.5
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 24 9.5
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 24 9.5
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 28.7 bits (61), Expect = 0.34
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 246 EPFEMFDPLYDKPWSRIGPYLVGKRI 323
EPF+ D LYD+ +R GP L GK+I
Sbjct: 670 EPFDTTDSLYDRLLARKGP-LFGKKI 694
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 27.5 bits (58), Expect = 0.77
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 207 YISVWLQYKARIQEPFEMF 263
Y+ +W+QY I EP E+F
Sbjct: 119 YLRIWMQYVNYIDEPVELF 137
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 382 FRERSIEIVYVRFVNVRLVFIRLPTKYG-PILDQGLSYKGS 263
F+ R + VY+ ++ RLV + T+YG ++D L+ +G+
Sbjct: 9 FKGRLLFFVYLLIISTRLVAADMNTQYGCYLVDSSLTEQGT 49
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 25.4 bits (53), Expect = 3.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -3
Query: 205 MVVAQELNMITPNDPNAIFGCLTEMSSNMIPTT*NCVSLAM--YHDQTMHISR 53
+ VAQ +I+ + N C+ E S P +CVS M Y D +SR
Sbjct: 29 LAVAQAGELISKINENCFDKCIPEPGSTFDPNEKSCVSKCMERYMDAWNIVSR 81
>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 167
Score = 24.6 bits (51), Expect = 5.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 340 LQTLRRLFQWTVPES 384
L ++RR F W +PES
Sbjct: 100 LNSIRRYFNWEIPES 114
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 5.5
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +3
Query: 21 NLLYINNLYPQREMCMVWSWYMANDTQFYV 110
+L Y N LY + +++ W + N +Y+
Sbjct: 342 SLWYNNKLYSTAFLALIFGWSVWNGASYYI 371
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 7.2
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +3
Query: 42 LYPQREMCMVWSWYMANDTQFYVVGIILLLISVKHPKI 155
LYPQ M A D QFYV LL+ V HP I
Sbjct: 708 LYPQFLMHPEDEEGFAIDDQFYVGDSGLLVKPVTHPSI 745
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 6 NWWWRNLLYINNLYPQREMCMVWSWYMANDTQFYVVG 116
+W WR+ I + +E C VW++ AN +F G
Sbjct: 337 SWSWRHSGRIVSAC--QEYCYVWNFNKANPLEFVHAG 371
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 289 DQGLSYKGSNISKGSCILALYCSQTDI 209
D+GLS+K NI A++C ++
Sbjct: 816 DRGLSHKHQNIPLPKTCAAIFCGNDEL 842
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 23.8 bits (49), Expect = 9.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 255 QRAPVSSLCTVAKQIYRW 202
Q P+ +CT K++ RW
Sbjct: 220 QVLPIEGMCTKCKRVLRW 237
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 23.8 bits (49), Expect = 9.5
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3
Query: 6 NWWWRNLLYINNLY 47
NWWW +Y + +Y
Sbjct: 175 NWWWPTFVYNDFMY 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,918
Number of Sequences: 5004
Number of extensions: 32305
Number of successful extensions: 80
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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