Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5811
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551... 29 0.99
07_03_0328 + 16833423-16833541,16833638-16833791,16834449-168344... 29 1.3
08_01_0185 + 1558580-1558755,1558848-1559737,1559828-1559919,156... 28 2.3
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 2.3
12_01_0853 + 7996492-7996667,7996751-7997655,7998533-7998624,799... 27 4.0
11_06_0341 - 22507098-22507982,22508616-22508783,22518740-225188... 27 4.0
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 27 4.0
06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647... 26 9.2
05_06_0074 + 25375431-25375631,25375785-25376195,25376474-253765... 26 9.2
02_02_0336 + 9081958-9082222,9082466-9082569,9082632-9082681,908... 26 9.2
>12_02_1110 +
26154024-26154314,26154400-26154944,26155023-26155109,
26155237-26155293,26155369-26155607,26155715-26155833,
26155945-26156031,26156117-26156194
Length = 500
Score = 29.5 bits (63), Expect = 0.99
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +3
Query: 3 DNWWWRNLLYINNLYPQREMCMVWSWYMANDTQFYVVGIILLLISVKHPKIAFGSLGVIM 182
+ W ++L L+ ++ + +A + +YV G +LL + P+IA SL I
Sbjct: 251 ETWTGLSVLAFRGLWGYAKLAFASAVMLALEI-WYVQGFVLLTGFLPDPEIALDSLS-IC 308
Query: 183 LSSWATTIYISVWLQYKARIQ 245
++ W I + L Y A I+
Sbjct: 309 INYWNWDFQIMLGLSYAASIR 329
>07_03_0328 +
16833423-16833541,16833638-16833791,16834449-16834490,
16834964-16835104,16835471-16835728,16835857-16836492
Length = 449
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 140 NRNEQQYDPDDIELCVIGHVPR 75
N NE+ Y P D++LC+IG PR
Sbjct: 262 NPNEKIYIPLDLDLCMIGSWPR 283
>08_01_0185 +
1558580-1558755,1558848-1559737,1559828-1559919,
1560018-1560086,1560218-1560316
Length = 441
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +3
Query: 78 WYMANDTQFYVVGIILLLISVKHPKIAFGSLGVIMLSSWATTIYISVWLQYKARIQEPFE 257
WY A +VG +L + ++ +G +++ SW T+Y ++W + P +
Sbjct: 32 WYSAFHNVTAMVGAGVLSLPYAMSELGWGPGIAVLILSWIITLY-TLWQMVEMHEMVPGK 90
Query: 258 MFDPLYD 278
FD ++
Sbjct: 91 RFDRYHE 97
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 382 FRERSIEIVYVRFVNVRLVFIRLPTKYGPILDQG 281
F E +I ++YV +N + + RL Y ++D+G
Sbjct: 931 FEEGAINVIYVVLMNCKSMLERLSNSYDYLVDEG 964
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 346 FVNVRLVFIRLPTKYGPILDQGLSYKGSNISKGSCILALYC 224
F++V V ++PT Y IL + S GSN +C+ L C
Sbjct: 461 FISVHCVAGQVPTGYISILVRVKSNIGSNPILHTCVYGLSC 501
>12_01_0853 +
7996492-7996667,7996751-7997655,7998533-7998624,
7998751-7998819,7998949-7999047
Length = 446
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +3
Query: 78 WYMANDTQFYVVGIILLLISVKHPKIAFGSLGVIMLSSWATTIYISVWLQYKARIQEPFE 257
WY A +VG +L + ++ +G M+ SW T+Y ++W + P
Sbjct: 32 WYSAFHNVTAMVGAGVLSLPFAMSELGWGPGVAAMIMSWVITLY-TLWQMVEMHECVPGR 90
Query: 258 MFDPLYD 278
FD ++
Sbjct: 91 RFDRYHE 97
>11_06_0341 -
22507098-22507982,22508616-22508783,22518740-22518893,
22519396-22519728,22521106-22521374
Length = 602
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 243 VSSLCTVAKQIYRWSS-PKNST*SRLMTRTRFSDV 142
V + +V+ Y W S PKN+ SR++ TRF V
Sbjct: 95 VDDVWSVSSWEYIWGSLPKNNNGSRIVVTTRFKSV 129
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 156 AFGSLGVIMLSSWATTIYIS 215
+FGSLGV S+WA+ Y S
Sbjct: 282 SFGSLGVFWFSTWASKAYSS 301
>06_03_0203 -
17863130-17863940,17864023-17864341,17864653-17864716,
17864811-17864929,17865515-17865640,17866626-17866632,
17867421-17867562,17867720-17867738,17868082-17868292
Length = 605
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +3
Query: 72 WSWYMANDTQFYVVGIILLL--ISVKHP 149
WS +MA+D+ F++ G++ L +++K P
Sbjct: 578 WSSFMADDSLFFIEGVLHLRAELTIKQP 605
>05_06_0074 +
25375431-25375631,25375785-25376195,25376474-25376589,
25377016-25377064,25377722-25378247,25378339-25379060
Length = 674
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 97 VSLAMYHDQTMHISRCGYKLLMYNRF 20
V+ AM+HDQ S+ G+ L++ F
Sbjct: 196 VTNAMFHDQAWAFSQAGHTFLLHTAF 221
>02_02_0336 +
9081958-9082222,9082466-9082569,9082632-9082681,
9083484-9083566,9084129-9084257,9085821-9085881,
9086010-9086826
Length = 502
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +3
Query: 72 WSWYMANDTQFYVVGIILLL--ISVKHPKI 155
WS +MA+D+ F++ G++ L +++K P +
Sbjct: 473 WSTFMADDSLFFLDGVLHLRAELTIKQPTV 502
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,489,176
Number of Sequences: 37544
Number of extensions: 198975
Number of successful extensions: 424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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