Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5811
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   3.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   8.7  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 FEMFDPLYDKPWSRIGPY 305
           FE + P++ + W+ + PY
Sbjct: 144 FESWRPIFRQNWASLQPY 161


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 118 IPTT*NCVSLAMYHDQTMH 62
           + TT N   +A+Y  QT H
Sbjct: 783 VKTTLNISDIALYPSQTTH 801


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -1

Query: 294 SLTRAYRIKGRTFQRAPVSSLCTVAKQIY 208
           SLTR  R       R     +C + K++Y
Sbjct: 14  SLTRLRRHIQNVHTRPSKEPICNICKRVY 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,419
Number of Sequences: 438
Number of extensions: 2259
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)