Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5810
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 30 1.7
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511... 28 5.2
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 28 6.9
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 6.9
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 28 6.9
11_06_0248 + 21680237-21680392,21680450-21681141,21681397-216817... 27 9.1
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 27 9.1
11_06_0204 + 21191611-21192807 27 9.1
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593... 27 9.1
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 27 9.1
03_02_1018 + 13234436-13234729,13235301-13235423 27 9.1
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 424 KGSGSDQDMNGNSFTLASSGDNAAIPTNP 338
KG+G++Q NGNS T SS ++ +NP
Sbjct: 332 KGNGTNQQANGNSSTGNSSSSQSSSKSNP 360
>06_03_0465 +
21049412-21049878,21049947-21050790,21050994-21051121,
21051232-21051247
Length = 484
Score = 28.3 bits (60), Expect = 5.2
Identities = 30/118 (25%), Positives = 49/118 (41%)
Frame = +2
Query: 110 YQFFPVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDKV 289
Y FP S + Q R A+D A PQ+ + ++ M+ W + R+
Sbjct: 226 YAGFPALSETSQISRRRADDDEAAAAAQPQKVERLWMTMLPCWESWAVYARQ-------- 277
Query: 290 EIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPIHILV*SRTFPSLLRSESAQAGV 463
E+ PG+ Y F V +++A + E IP +++ SL R SA G+
Sbjct: 278 EVVLPGVALAFLY--FTVLSFGTLMTATLDWEGIPAYVI-------SLARGVSAAVGI 326
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Frame = +2
Query: 107 QYQFFPVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDK 286
+++F G + F+ A ND V L Q Y + + ++ +R K K
Sbjct: 22 EFRFRETGRGCITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLK 79
Query: 287 VEIESP--------GILNGGEYRGFWVRWDSGIISAGR 376
+E++ G+ ++ +W+ G+IS G+
Sbjct: 80 IEVDGKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQ 117
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 304 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 188
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -3
Query: 412 SDQDMNGNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPA 233
S + NG+S T++ D A P +T + G+ FN +G P DAL+ S +
Sbjct: 217 SINNTNGSSATISDRHDATAALDKPMSTAETTDGLIGSKQFNEVGTAEAMP-DALTSSSS 275
Query: 232 S 230
S
Sbjct: 276 S 276
>11_06_0248 +
21680237-21680392,21680450-21681141,21681397-21681724,
21681945-21682801,21682928-21683378,21683761-21684066,
21684136-21684456,21684539-21684745,21685568-21685810
Length = 1186
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -1
Query: 225 ITSYIGSDSCGPVVSATWASFAALTLN*TDPLETGKNWY*RLSSVATSHDISHDCC 58
I SY+ V+ W+S+ T+N T P KN+Y R+ ++ CC
Sbjct: 275 IKSYLNDKRYFIVIDGVWSSYIWNTINQTLP----KNFYSRILITTEIDHVAQRCC 326
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -1
Query: 384 SPSRPAEIMPLS-QR----TQKPRYSPPLRIP 304
SP+ PA P S QR Q PRY PPLR P
Sbjct: 332 SPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>11_06_0204 + 21191611-21192807
Length = 398
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 203 SDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNG 319
S +Y G WG+A ++ R++ D V++ PG+ G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233
>06_03_1024 -
26958473-26958661,26958750-26958815,26959234-26959303,
26959526-26959773,26959938-26960029,26960726-26960871,
26961001-26961185,26961721-26961838,26961948-26962087
Length = 417
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 358 HYLRWTRG*SYSHSYLGLIPNLSQFTTFGVCTGWGATG 471
H+LRWT SY + Y + F V TG GA G
Sbjct: 40 HHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAG 77
>05_05_0195 + 23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 409 LIPNLSQFTTFGVCTGWGATGSWKN-PRWSGIRYSRQVRV*VWTCPPLVLWNFDL-PGEP 582
L+ +L F V + WG T W + R++G++ +++V T PP P E
Sbjct: 1173 LLASLLSFVARTVNSYWG-TQQWVDLARYTGLQKTKEVPPVEATAPPAETSQLATPPAET 1231
Query: 583 HKLATFPLTTS 615
+LAT P TS
Sbjct: 1232 SQLATPPAETS 1242
>03_02_1018 + 13234436-13234729,13235301-13235423
Length = 138
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 434 LRSESAQAGVPQAPGKIQDGAEFDTPDRLEYKFGPVPLW 550
+ +A AGVP ++ DG EF R + P +W
Sbjct: 1 MEGAAAAAGVPMVKVRVGDGVEFSVQARRLAELAPGYIW 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,866,897
Number of Sequences: 37544
Number of extensions: 483822
Number of successful extensions: 1410
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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