Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5808
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   4.1  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    26   4.1  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    26   4.1  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   9.5  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 316 ILLYSISMWIIYIWMDNIYFWVCI 245
           IL +S  + IIY+W      W C+
Sbjct: 19  ILAHSFFVKIIYLWASGCLLWYCL 42


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 268 NIYFWVCICNLI*ISLNLPLFSLHYLWL 185
           ++Y  VC+ +L+ IS++ PLF     WL
Sbjct: 158 SVYAAVCVSSLVGISMDDPLFEGTLQWL 185


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -3

Query: 380 VLIWKCFVEYYLKFILIIKISDSSLFYFDVDNLYLDG*YIFLGMYL*FNINFIEPTTIFS 201
           ++ W  F  Y +  + +   S+  L +  +  L++ G YIF  +Y    I   +P  +F 
Sbjct: 160 LIFWGFFTCYQMLGVSVFGESEYILAFIKL--LFITGFYIFAIIYAAGGIPHHKPPNLFK 217

Query: 200 ALPL 189
            +PL
Sbjct: 218 EMPL 221


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 555 TAFAFTKLRVFIIFYNSVSDVVYE 484
           +  +F+KL  F++F+N+ S   YE
Sbjct: 593 SCLSFSKLNDFVVFFNNYSRFEYE 616


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 178 YQSTKGSAEKIVVGSMKFILNYKYIPKNIYYPSKYKLSTSK 300
           Y + +G AE  +    + +  Y Y  KN+Y+ +    S SK
Sbjct: 320 YNTFQGEAESAINNLNELLGTYGYSNKNVYFVTVILSSMSK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,184
Number of Sequences: 5004
Number of extensions: 50187
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)