Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5808
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39652-1|AAA80403.2|  552|Caenorhabditis elegans Abnormal cell m...    29   2.9  
AB126261-1|BAD02168.1|  552|Caenorhabditis elegans MIG-23 protein.     29   2.9  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    28   5.0  

>U39652-1|AAA80403.2|  552|Caenorhabditis elegans Abnormal cell
           migration protein 23 protein.
          Length = 552

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 148 CKFCMKCNK*INNLCCEEKRLKIFGYKKNRFSVK 47
           C F + C K  + LC ++KR   FG  ++++S K
Sbjct: 503 CLFVLVCAKEQSVLCFDDKRRSSFGMSRSQYSYK 536


>AB126261-1|BAD02168.1|  552|Caenorhabditis elegans MIG-23 protein.
          Length = 552

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 148 CKFCMKCNK*INNLCCEEKRLKIFGYKKNRFSVK 47
           C F + C K  + LC ++KR   FG  ++++S K
Sbjct: 503 CLFVLVCAKEQSVLCFDDKRRSSFGMSRSQYSYK 536


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 169 GVLYQSTKGSAEKIVVGSMKFI-LNYKYIPKNIYYPSKY 282
           G+   +  G+AE + VG ++ +  NYK I K I+ P K+
Sbjct: 177 GIESLAVSGAAEVVKVGILRALGKNYKKISKKIFNPKKH 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,351,441
Number of Sequences: 27780
Number of extensions: 262186
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)