Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5808
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   0.84 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   0.84 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.0  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -2

Query: 480 FRWRRHLNYSEVFSTEFSNNLNGYYFSI*RYNLCLNLE 367
           +++  + NY+  ++  ++NN N  Y  + + N  +N+E
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNYKKLYK-NYIINIE 125


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -2

Query: 480 FRWRRHLNYSEVFSTEFSNNLNGYYFSI*RYNLCLNLE 367
           +++  + NY+  ++  ++NN N  Y  + + N  +N+E
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNYKKLYK-NYIINIE 125


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 99  SQHKLFIYLLHFMQNLH 149
           +QH LF+ L  F+QNLH
Sbjct: 555 NQH-LFVELDQFIQNLH 570


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 196 SAEKIVVGSMKFILNYKYIPKNIYYPSKYKLSTSK*NKEESLILIIKM 339
           SA +I   SMK    Y+   + I Y   YK+     NK+E +   +K+
Sbjct: 404 SALEIFSTSMKDPAFYRIYKRIIDYYHSYKMHQKPYNKDEIIYPNLKI 451


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 196 SAEKIVVGSMKFILNYKYIPKNIYYPSKYKLSTSK*NKEESLILIIKM 339
           SA +I   SMK    Y+   + I Y   YK+     NK+E +   +K+
Sbjct: 404 SALEIFSTSMKDPAFYRIYKRIIDYYHSYKMHQKPYNKDEIIYPNLKI 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,022
Number of Sequences: 438
Number of extensions: 3941
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)