Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5806
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20862-4|AAK29862.1|  196|Caenorhabditis elegans Hypothetical pr...    31   1.00 
U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   3.0  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      29   3.0  
U23521-3|AAC46814.2|  213|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p...    28   7.0  
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p...    28   7.0  
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact...    28   7.0  
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    27   9.3  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       27   9.3  

>U20862-4|AAK29862.1|  196|Caenorhabditis elegans Hypothetical
           protein W06E11.2 protein.
          Length = 196

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 165 QKQESPITGASQVNHLDQTKQKRESPLDLSVKTVKNSADSSTTQDD 302
           ++ E P+ G+S+V H    K K+ + LDL  +  +N A  +TT+ D
Sbjct: 138 EEGEEPVEGSSEV-HPGLKKIKKTAILDLESRQQRNKAYGTTTEGD 182


>U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical
           protein F52C9.5 protein.
          Length = 618

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 120 TVSVTSIVNQMNQTKQKQESPITGASQV-NHLDQTKQKRESPLDLSVKTVKNSADSSTTQ 296
           T S  S+ N+MN+  +K+E   +   Q+ N  D       +P   + +  KN +DSS   
Sbjct: 56  TASADSLFNRMNKILRKEEKQKSQNFQIFNEKDLVTNSNANPYFSTTRKPKNRSDSSQKA 115

Query: 297 DD 302
            D
Sbjct: 116 RD 117


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +3

Query: 111 TRMTVSVTSIVNQMNQTKQKQESPITGASQVNHLDQTKQKRESPLDLSVKTVKNSADSST 290
           T +T ++T  +N  +       SPI+  S  N +       E+  D SV+ +     SST
Sbjct: 256 TLLTSAITPTLNTESGFLSSPSSPISSLSSWNAVLTLPDSEENDSDNSVEDIGRKEPSST 315

Query: 291 TQDDAVDSASVEGKIL 338
              + + ++S+   IL
Sbjct: 316 NPAENITASSLPTSIL 331


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
           protein C18H2.5 protein.
          Length = 1139

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 528 RLPETYPVESSHVYAERS 581
           R+PE +PV S H+YA++S
Sbjct: 906 RVPELFPVSSFHIYADKS 923


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 420 ERNLLYVQLYSLLEVLDDYSK-DVVAVHVIFCLRLMRNLLRRPVLLKSLQNFSPSSL 253
           E+NLL+ Q+Y++L   DD  +  + +   +  L + R+LL  P  L   +  +P  +
Sbjct: 757 EKNLLHAQIYTILSRYDDAEQLYLESSRPMEALNMRRDLLEWPKALVLAETMNPKEI 813


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 420 ERNLLYVQLYSLLEVLDDYSK-DVVAVHVIFCLRLMRNLLRRPVLLKSLQNFSPSSL 253
           E+NLL+ Q+Y++L   DD  +  + +   +  L + R+LL  P  L   +  +P  +
Sbjct: 757 EKNLLHAQIYTILSRYDDAEQLYLESSRPMEALNMRRDLLEWPKALVLAETMNPKEI 813


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 420 ERNLLYVQLYSLLEVLDDYSK-DVVAVHVIFCLRLMRNLLRRPVLLKSLQNFSPSSL 253
           E+NLL+ Q+Y++L   DD  +  + +   +  L + R+LL  P  L   +  +P  +
Sbjct: 757 EKNLLHAQIYTILSRYDDAEQLYLESSRPMEALNMRRDLLEWPKALVLAETMNPKEI 813


>U23521-3|AAC46814.2|  213|Caenorhabditis elegans Hypothetical
           protein F41C3.7 protein.
          Length = 213

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 600 LQTRHIYSALRRHEKILLDKFQVIFENHRCRY 505
           +QT+ IY A+   EK+ L+ F   FE+H+  +
Sbjct: 169 VQTKTIYRAVYNKEKVSLEVFIQYFESHKLNH 200


>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
           protein R09H3.1 protein.
          Length = 1073

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 156 DSFDLLSTLLKLSFEFVDW 100
           D FDL  TLLKL F+  DW
Sbjct: 357 DRFDLHETLLKLPFDQYDW 375


>Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical
           protein C49C3.11 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -1

Query: 455 CASFSVLSC-KIRSEIYFMCSCIAYWRCLXXXXXTWLQCM*YFAF 324
           C     + C K     +  C C+  WRCL      ++ C+ +  F
Sbjct: 48  CVKRGFICCFKFCKYTFLCCRCVIVWRCLWLLIIFFVGCLIFTLF 92


>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
           protein 10, isoform b protein.
          Length = 1371

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +3

Query: 105 QQTRMTVSVTSIVNQMNQTKQKQESPITGASQVNHLDQTKQKRESPLDLSVKTVKNSADS 284
           QQ  M+ +  + +NQMNQ + +Q+S     +Q N  +QT  + +   + S +T+K +   
Sbjct: 247 QQQPMSQNQANQINQMNQNQNQQQSHNQNMTQ-NQRNQTGPQNQQRTNDS-RTMKQTPQQ 304

Query: 285 STTQ 296
             +Q
Sbjct: 305 QPSQ 308


>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
           protein 10, isoform a protein.
          Length = 1563

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +3

Query: 105 QQTRMTVSVTSIVNQMNQTKQKQESPITGASQVNHLDQTKQKRESPLDLSVKTVKNSADS 284
           QQ  M+ +  + +NQMNQ + +Q+S     +Q N  +QT  + +   + S +T+K +   
Sbjct: 247 QQQPMSQNQANQINQMNQNQNQQQSHNQNMTQ-NQRNQTGPQNQQRTNDS-RTMKQTPQQ 304

Query: 285 STTQ 296
             +Q
Sbjct: 305 QPSQ 308


>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
           molecule UNC-10 protein.
          Length = 1563

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +3

Query: 105 QQTRMTVSVTSIVNQMNQTKQKQESPITGASQVNHLDQTKQKRESPLDLSVKTVKNSADS 284
           QQ  M+ +  + +NQMNQ + +Q+S     +Q N  +QT  + +   + S +T+K +   
Sbjct: 247 QQQPMSQNQANQINQMNQNQNQQQSHNQNMTQ-NQRNQTGPQNQQRTNDS-RTMKQTPQQ 304

Query: 285 STTQ 296
             +Q
Sbjct: 305 QPSQ 308


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
           protein 40 protein.
          Length = 1415

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 429 TTQYGERSTNVSYNPPTPQLHNSVRYNGTYDSRRLPETYPVESSHVYA 572
           +T  G R  NV ++PP  +  N +RY+  Y    +     + SS   A
Sbjct: 448 STSSGSRFINVEWDPPVQRNGNIMRYHIFYKDNLIDRERMINSSSTSA 495


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 429 TTQYGERSTNVSYNPPTPQLHNSVRYNGTYDSRRLPETYPVESSHVYA 572
           +T  G R  NV ++PP  +  N +RY+  Y    +     + SS   A
Sbjct: 448 STSSGSRFINVEWDPPVQRNGNIMRYHIFYKDNLIDRERMINSSSTSA 495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,177
Number of Sequences: 27780
Number of extensions: 288791
Number of successful extensions: 991
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)