Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5804
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    79   4e-16
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    68   1e-12
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    29   0.45 
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   3.2  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   5.5  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    25   5.5  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   5.5  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   7.3  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   9.6  

>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 79.0 bits (186), Expect = 4e-16
 Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = +2

Query: 278 MTRYFENTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTWSRQVRD-GCLYTKRLLTKTN 454
           MT    + +  N SW+ V+  +  RYPNP S HV+S D   R V D G LYT+RLL K  
Sbjct: 1   MTAICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDDEGRLYTERLLVKQG 60

Query: 455 RVPKWGERFFNAKSVKIIEESVVDPEKKIL 544
           R+P+W     N     I+E SV+DP K+ L
Sbjct: 61  RLPRWASDLLNVNKSYILERSVIDPSKQEL 90


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
 Frame = +2

Query: 284 RYFENTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTWSRQVRD-GCLYTKRLLTKTNRV 460
           + FE+  +F + ++QV+  +W++YPN  +THV++ DT  R+V D G LYT+RL+T    +
Sbjct: 2   KIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLYTERLITCHQAL 61

Query: 461 PKWGERFFN-AKSVKIIEESVVDPEKKIL 544
           P+W  +  + A+   I E S VD + + L
Sbjct: 62  PRWILKLIDGAQDCYIRETSYVDLKARTL 90


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 482 KIFHPILELCWF*SGAALYKDNRLEPVGSMYLQIGREYSAD 360
           KI HP    C    G  +YKD++ +  G +YL++  E+  D
Sbjct: 308 KILHP--GDCLIIPGEGMYKDSKTDLRGDLYLEVDIEFPKD 346


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 294 SKYLVILPFRLQCFLLQLYLVFIPKQKENVLSFQYI*M 181
           SKY  I   +++CF L +    IPKQ  +++ F  + M
Sbjct: 21  SKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILIM 58


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 424  KTTVSNLSAPCIFR*DVSTLRIWVSPPVTTRNLIPTEVKDRSI 296
            K T +NL   C+   DV   ++ +S   +     P E+KD+ I
Sbjct: 1096 KFTRNNLVGVCVLSVDVPNRKVALSARNSRTQSQPVEIKDKEI 1138


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 263 FNAFYFNYIWSSFQNRRKTSYLFNTS 186
           F+ +Y+N I S FQN +K  Y+   S
Sbjct: 317 FSDYYYNGIPSYFQNPQKARYMLMLS 342


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 388 RYMEPTGSRRLSLYKA 435
           RY  PTG + LSLYKA
Sbjct: 83  RYGFPTGEKMLSLYKA 98


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -3

Query: 523 NDTLFDYFNGFSVEKSFTPFWNSVGFSQEPLC--IKTTVSNL-SAPCI 389
           N+T     +G S++    P W S  F  E     + T++ N+   PC+
Sbjct: 431 NNTAIQTLSGNSIDAIIAPIWASTSFLPESKADHLYTSLFNICDCPCV 478


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 475 FTPFWNSVGFSQEPLCIKTTVSNLSAPCIFR*D-VSTLRIW 356
           + P+++S+GF     C+  T S   +  IFR + +S LR W
Sbjct: 392 YEPWYSSLGFWPSKYCVSDT-SREESVNIFREECLSVLRSW 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,209
Number of Sequences: 5004
Number of extensions: 49239
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)