Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5804
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407...    33   0.11 
02_05_0533 - 29818276-29818866                                         28   4.2  
02_01_0519 - 3748415-3748432,3749010-3749041,3749474-3749606,374...    28   5.6  
01_03_0304 - 14838977-14838988,14839291-14840302,14840414-148406...    27   7.4  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    27   9.8  

>08_01_0462 +
           4072369-4072630,4072732-4072814,4072937-4073020,
           4073509-4073584,4073712-4073784,4073878-4073951,
           4074158-4074251,4074374-4074443
          Length = 271

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +3

Query: 300 LRSLTSVGIKLRVVTGGDTQIRRVLTSYLKIHGADRFETVV 422
           LR L   G+KL VV+  DT++R++L     +H +D F+ +V
Sbjct: 161 LRDLKDAGVKLAVVSNFDTRLRKLLKD---LHVSDMFDAIV 198


>02_05_0533 - 29818276-29818866
          Length = 196

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 305 VFNFSWDQVARGYWRRYPNPQSTHVLS 385
           V+   WD+V    WR++ +P S   LS
Sbjct: 9   VYRHPWDRVTAAAWRKFTDPASRTALS 35


>02_01_0519 -
           3748415-3748432,3749010-3749041,3749474-3749606,
           3749702-3749765,3749948-3750010,3750101-3750243,
           3750358-3750495,3750570-3750691,3750798-3750963,
           3751058-3751180,3751325-3751396,3751484-3751591,
           3752730-3752846,3752953-3753040,3753162-3753253,
           3753378-3753490,3753994-3754127,3754209-3754564,
           3754649-3754861
          Length = 764

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 57  ENMNDNTCSNTMLHFALYI*TLKFAKVISRYTRIKFRRKKPAFRCIEKIRRFPSVLE*RP 236
           +++ D+   +  L    ++ TLKFA  IS +T  KFR  KP       +R    VL+  P
Sbjct: 128 DSIEDSPEESRHLRVRDFVVTLKFAAKISLWTLRKFRGGKPNRESRAALRALDVVLKELP 187


>01_03_0304 -
           14838977-14838988,14839291-14840302,14840414-14840609,
           14840795-14841149
          Length = 524

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = -3

Query: 532 FRINDTLFDYFNGFSVEKSFTPFWNSVGFSQEPLCIKTTVSNLSAPCIFR*DVSTLRIWV 353
           F  N TL+D  +G    K    +WN +  + E       +   ++  IF  DV +  I +
Sbjct: 310 FISNGTLYDLLHGNLQSKCVLTWWNRIRIALEAASALAYLHCAASVPIFHRDVKSANILL 369

Query: 352 SPPVTTR 332
               TT+
Sbjct: 370 DDNFTTK 376


>07_03_1772 +
           29411874-29413218,29413355-29413421,29413749-29413896,
           29415293-29415416,29416340-29416590,29416923-29418449,
           29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -3

Query: 508 DYFNGFSVEKSFTPFWNSVGFS--QEPLCIKTTVSNLSAPCIFR*DVSTLRIWVSPPVTT 335
           D    F + K  + F+ S+ F   ++ LC +   SN S+   F     +L I    PVTT
Sbjct: 449 DRAEAFEMAKGVSCFYWSIQFPNFKDHLCFRNC-SNASSTRHF--SYRSLLIRTEKPVTT 505

Query: 334 RNLIPTEVKDRSIFEISRHFTV 269
           RN    EV    + +++RH  V
Sbjct: 506 RNHAYAEVVVFVLDQMTRHTQV 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,066
Number of Sequences: 37544
Number of extensions: 260053
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)