Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5802
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    27   2.4  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.2  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   5.6  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.4  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   7.4  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 451 TTLLLHVLIYRLYNNN*K 504
           T LL HV++Y LY+NN K
Sbjct: 202 TVLLHHVMLYDLYSNNLK 219


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 449 PLFTKIARTEEYEIFHTCREYREGVQNANIFLKL--PLKYIKSI 324
           PLF    R   +++F + R++  G+    + LKL   L Y+K +
Sbjct: 15  PLFNCERRFSYFDMFRSKRKFTSGILTEQLALKLDSELGYVKQV 58


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 265 SQTLTTNKRVYSWLCVSCFFIDLMY 339
           S T  T+     W C   FF D+MY
Sbjct: 454 STTAKTSNAYLGWNCTFSFFSDIMY 478


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 458 KVVPLFTKIARTEEYEIFHTCREYREGVQNANI 360
           KV  LFTKIA    + +++  R+Y   VQN +I
Sbjct: 12  KVALLFTKIATEAGHIVYNVVRDY---VQNEDI 41


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 298 SWLCVSCFFIDLMYFNGNFKKILAFCTPSLYSLQVWKISYSSVRAIFVKR 447
           S +CV C F  +M   GNF       T S  +      S ++V ++FV +
Sbjct: 160 SIVCV-CTFSPIMIGKGNFTSTTVTTTTSATATPTASASSNAVESVFVTK 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,264
Number of Sequences: 5004
Number of extensions: 45119
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)