Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5802
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1243 - 25527523-25527960,25527993-25528604                       29   2.5  
05_03_0288 - 11653136-11654074,11655252-11655965                       28   4.3  
03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867...    27   10.0 

>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 77  QVGCELVHLSKE*KNKKISIVWYKG*SLKAKHMTVSQQKLIGRWCLPVRAY 229
           ++GC +V+L +E K+  +S+  Y    L+A          + RW LPVR Y
Sbjct: 179 ELGCRIVYLCREPKDVVVSLWHYMNKGLRA----------VCRWLLPVRQY 219


>05_03_0288 - 11653136-11654074,11655252-11655965
          Length = 550

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -2

Query: 251 FTGGRTHYKPARASTTVRLISAAKQSYVSLLMINLYTIQLR-----FFYFFIL 108
           F GGR H++P   + T   I  A + +   +MI+L +  LR     F YF I+
Sbjct: 23  FLGGRHHHRPTSTTATGAAIPPADKLHNQTVMIDLESWLLRSPMSTFPYFMIV 75


>03_05_0868 +
           28385066-28385478,28386050-28386167,28386365-28386726,
           28389308-28389406,28389485-28389890
          Length = 465

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 241 PPVNAGSRSQTLTTNKRVYSWLCVSCFFID 330
           P  +AG   +T  T  +   WLC  C F++
Sbjct: 274 PKFSAGKGRETTETEMKKGDWLCPKCHFMN 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,791
Number of Sequences: 37544
Number of extensions: 291277
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)