Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5802
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   3.6  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   3.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.3  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 262 RSQTLTTNKRVYSWLCVSCFFIDLMYFNGNFKKI 363
           R +  +   ++ S L  SC + +  Y N N+KK+
Sbjct: 293 RERERSKEPKIISSLSNSCNYSNNYYNNNNYKKL 326


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 212 STTVRLISAAKQSYVSLLMINLYTIQ 135
           S+TV  I   + +YV+L+++ ++TI+
Sbjct: 276 SSTVGTIFGYQGTYVNLVIVKVFTIK 301


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 393 STSVENFILLRPRNFRKKR 449
           S+S ++++L  PRN ++KR
Sbjct: 200 SSSTKSYVLEGPRNGKRKR 218


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 344 MVILKKY*HSALLLYILYKCGKFHTP 421
           +  + +Y +   L+Y + +CGKF  P
Sbjct: 60  LYFVMEYVNGGDLMYQIQQCGKFKEP 85


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 464 SNKVVPLFTKIART-EEY-EIFHTCREYREGVQNA 366
           ++  V + T +A + E Y  I+H  R YR G++ A
Sbjct: 116 TSSYVSVLTIVAFSIERYLAIYHPLRHYRSGLKRA 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,271
Number of Sequences: 438
Number of extensions: 3060
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)