Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5799
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    26   5.9  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   7.8  

>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -2

Query: 366 QCRMPFYTATQYNHSQKVLYPAKNSS*VFHIFFVPMLI*CT----MLLDLDLLSFGCFL 202
           Q  +P YT+  YN+S    + A N   +  I  VP+L+  +     L D D++  GC L
Sbjct: 301 QASVPIYTSMLYNYSS---FQAGNFLSLAGIINVPLLLIFSYLTRYLTDRDIILLGCCL 356


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = +3

Query: 270 KKCEKLMKSSLQDKGLFGNDYIELQCKKAFDIEECMKWLEQEEATLLGLDAGEVYVAGRY 449
           ++ E L +   +D        IE+  +    IEE   +L         L +  + V   Y
Sbjct: 29  EELELLFRKQCEDTFTLQAINIEVDTQDENKIEEVRIYLSTPAFDKTILTSACITVRSYY 88

Query: 450 HSLVPILQELDGRGEPYQYS 509
            S  PI+Q LD +G  ++Y+
Sbjct: 89  PSQPPIVQLLDEKGGKHKYT 108


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 393 EEATLLGLDAGEVYVAGRYHSLVPILQE-LDGRGEPYQYSVAV 518
           +EA ++  D    Y  G Y SLVPIL E LD   EP   S  +
Sbjct: 408 QEAVIVIRDILRKY-PGSYKSLVPILYENLDSLDEPDAKSAVI 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,466
Number of Sequences: 5004
Number of extensions: 62254
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)