Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5798
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   4.4  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   4.4  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    26   5.8  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    26   5.8  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    26   5.8  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    26   5.8  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   7.7  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 309 GRMYLAQVTSWKALASVVSCKIRFH 383
           GR  L  +T W  +A+++ C + FH
Sbjct: 399 GRRILLLLTVWGMIAALIVCAVAFH 423


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 514 NDIAVLLCCICFAIVYWVAIFI 579
           N ++ ++  I F +VYW+ IFI
Sbjct: 274 NYVSFMVGSIIFLVVYWIGIFI 295


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +3

Query: 519 YCCSPLLHLFCHCLLGSYFYK*TLNFNNKISF 614
           +C SP+LH   + + G++ Y+ ++   +  +F
Sbjct: 279 FCASPMLHYLSNIIFGNFDYRLSVIIGDLFTF 310


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +3

Query: 519 YCCSPLLHLFCHCLLGSYFYK*TLNFNNKISF 614
           +C SP+LH   + + G++ Y+ ++   +  +F
Sbjct: 279 FCASPMLHYLSNIIFGNFDYRLSVIIGDLFTF 310


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +3

Query: 519 YCCSPLLHLFCHCLLGSYFYK*TLNFNNKISF 614
           +C SP+LH   + + G++ Y+ ++   +  +F
Sbjct: 251 FCASPMLHYLSNIIFGNFDYRLSVIIGDLFTF 282


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +3

Query: 519 YCCSPLLHLFCHCLLGSYFYK*TLNFNNKISF 614
           +C SP+LH   + + G++ Y+ ++   +  +F
Sbjct: 279 FCASPMLHYLSNIIFGNFDYRLSVIIGDLFTF 310


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 574 FINRLLILIIKSHFGCNLYIRQRTRGQAS 660
           F+ RLL  +    +G  LY  +R R QAS
Sbjct: 468 FLRRLLYHLYSCQYGSFLYNSERERAQAS 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,774
Number of Sequences: 5004
Number of extensions: 45752
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)