Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5795
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   2.0  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   6.1  

>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 290 PKKYDFGRNLSHFCRTFS*GPDPLGQSR 207
           P+KYDF R L+ F   FS   D + Q++
Sbjct: 517 PEKYDFNRLLATFAMHFSSEEDEIQQTK 544


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 94  LQWMSSVAQRRRKLRSLEESFYRES 168
           +Q   S+ QRRRK+R L+ +  ++S
Sbjct: 268 IQASGSIIQRRRKIRRLKRAIRKQS 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,565
Number of Sequences: 5004
Number of extensions: 48765
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)