Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5795
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0795 - 31792231-31794780 30 0.86
01_06_0578 + 30375972-30376020,30376210-30376415 30 0.86
11_06_0698 + 26385989-26389090 29 2.6
06_03_0537 - 21910241-21910805,21910943-21911157,21911240-21911341 28 3.5
06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189... 27 6.0
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 27 6.0
01_06_0039 + 25857805-25858894,25858997-25859345,25860019-258601... 27 6.0
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 27 8.0
08_02_0699 + 20155509-20156189 27 8.0
01_06_0938 - 33179237-33179362,33179485-33179668,33180114-331804... 27 8.0
>02_05_0795 - 31792231-31794780
Length = 849
Score = 30.3 bits (65), Expect = 0.86
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +1
Query: 187 MMKSARPLDWPKG---SGPYENVRQKW--DKFLPKSYFLG*KVPEGDNEKVLLQSTCPRV 351
++++ R + PKG P + + +W DKF SY GD+ +L +S C RV
Sbjct: 624 VLETLRKIFSPKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSSGDDYDILAESVCDRV 683
Query: 352 FF 357
FF
Sbjct: 684 FF 685
>01_06_0578 + 30375972-30376020,30376210-30376415
Length = 84
Score = 30.3 bits (65), Expect = 0.86
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 253 KWDKFLPKSYFLG*KVPEGDNEKVLLQSTCPRVFFLDWTCPSELG 387
KW+ LP FL +G EKV +Q C + ++ ELG
Sbjct: 22 KWEALLPNDTFLIVASSDGVFEKVTMQDVCDLMLYVKLGVKQELG 66
>11_06_0698 + 26385989-26389090
Length = 1033
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 393 GMSQFRRASPVQEEDPWARTLKQHFFVISL 304
GM + RA+P DP+ T K+H V++L
Sbjct: 699 GMIKLERATPCSSRDPFLLTEKKHLKVLNL 728
>06_03_0537 - 21910241-21910805,21910943-21911157,21911240-21911341
Length = 293
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +1
Query: 13 EAKTSQEHL*RNALAQYSVEWRENRG---PLQWMSSVAQRRRKLRSLEESFYRESTRNS* 183
E ++ L +A AQ+ W EN G L + + +S+E++FY T +
Sbjct: 14 EKRSETLQLLHDACAQWGFFWLENHGINEDLMYKIKGLVNKHYEQSMEKNFYNSETAKNL 73
Query: 184 GMMKSARPLDW 216
G +DW
Sbjct: 74 GPDNVVSNVDW 84
>06_03_1001 +
26817231-26818246,26818341-26818525,26818614-26818917,
26819956-26820041,26820141-26820298,26820420-26820496,
26820586-26820652
Length = 630
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 59 SIRWNGVKTEDPCSGCHR 112
S+RW G+ T D CSG +R
Sbjct: 27 SVRWWGIFTPDQCSGINR 44
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 274 LEETCPTFVEHFRKGRI 224
L+ETC VEH RKG I
Sbjct: 1245 LQETCNLVVEHLRKGHI 1261
>01_06_0039 +
25857805-25858894,25858997-25859345,25860019-25860104,
25860242-25860399,25861489-25861565,25861656-25861722
Length = 608
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 59 SIRWNGVKTEDPCSGCHR 112
S+RW G+ T D CSG +R
Sbjct: 17 SVRWWGIFTPDQCSGINR 34
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 1 LIRHEAKTSQEHL*RNALAQYSVEWRENRGPLQWMSSVAQRRRKLRSLEESFYRESTRNS 180
L+R + EH R L+ + +W P +W+ + + L++ EE F + ++S
Sbjct: 237 LVRDASSWQCEHEWRQDLSVVT-KWLSGISPYRWLPANSSTSSNLKTFEEKFLTQQPQSS 295
>08_02_0699 + 20155509-20156189
Length = 226
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 128 RRRWATDDIHCRG 90
RRRWA DD CRG
Sbjct: 67 RRRWARDDAVCRG 79
>01_06_0938 -
33179237-33179362,33179485-33179668,33180114-33180409,
33180702-33180821,33180931-33181018,33181352-33181426,
33181565-33181632,33181770-33181852,33182010-33182058,
33183006-33183126,33183225-33183310,33183782-33183910,
33184033-33184155,33184277-33184486,33185217-33185240
Length = 593
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 298 VPEGDNEKVLLQSTCPRVFFLDWTCPSELGH 390
VPE EKV +CP + F++ +LGH
Sbjct: 34 VPESPVEKVSQIPSCPVIVFINTKSGGQLGH 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,827,440
Number of Sequences: 37544
Number of extensions: 338673
Number of successful extensions: 818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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