Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5795
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50806-2|CAA90690.1|   89|Caenorhabditis elegans Hypothetical pr...    28   4.1  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    28   4.1  
Z75710-7|CAN99690.1|  855|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z75710-6|CAB00028.1|  857|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and c...    27   9.5  

>Z50806-2|CAA90690.1|   89|Caenorhabditis elegans Hypothetical
           protein M79.4 protein.
          Length = 89

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 139 ILIFVVVGQPMTSTAGVLGFHAIPPNTGLRHFVIN 35
           +LI VVVGQP+ S  G L   A+  N+ L     N
Sbjct: 13  LLIAVVVGQPIQSQNGDLKMQAVQDNSPLNMEAFN 47


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 404  HSKGACPSSEGQVQSKKKTLGHVL*SSTFSLSPSGTFHPKKYDFGRNLSHFCRT 243
            H +G+C   +G+         H    S+ S S   +    +Y+F RNL HF  T
Sbjct: 941  HPRGSCCKMDGKQFCDPSNATHC---SSCSSSSVASLTTTEYEFYRNLHHFLET 991


>Z75710-7|CAN99690.1|  855|Caenorhabditis elegans Hypothetical
           protein D1081.7b protein.
          Length = 855

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 73  WRENRGPLQWMSSVAQRRRKLRS 141
           W+  RG  +W+S + +RR  + S
Sbjct: 695 WKNERGQFEWLSQIVKRRGAVTS 717


>Z75710-6|CAB00028.1|  857|Caenorhabditis elegans Hypothetical
           protein D1081.7a protein.
          Length = 857

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 73  WRENRGPLQWMSSVAQRRRKLRS 141
           W+  RG  +W+S + +RR  + S
Sbjct: 697 WKNERGQFEWLSQIVKRRGAVTS 719


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
           protein F57C7.4 protein.
          Length = 1484

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 268 LPKSYFLG*KVPEGDNEKVLLQSTCPRVFFLDWTCPSELGHAPLEWGERM 417
           LP +Y  G ++   +NE    Q +   V ++ +  PS  G+   E GER+
Sbjct: 772 LPLTYQFGYRIHYDNNETYEYQGSKSTVKYIQFFLPSTSGNGSDECGERI 821


>Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 172 RNS*GMMKSARPLDWPKGSGPYENVRQKW 258
           R S GM  +  P+D P  + P +  R++W
Sbjct: 15  RTSNGMQNATLPIDGPVNTEPKDPAREQW 43


>Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 172 RNS*GMMKSARPLDWPKGSGPYENVRQKW 258
           R S GM  +  P+D P  + P +  R++W
Sbjct: 15  RTSNGMQNATLPIDGPVNTEPKDPAREQW 43


>AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and
           chloride-dependentantidepressant- and cocaine-sensitive
           dopamine transporterprotein.
          Length = 615

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 172 RNS*GMMKSARPLDWPKGSGPYENVRQKW 258
           R S GM  +  P+D P  + P +  R++W
Sbjct: 15  RTSNGMQNATLPIDGPVNTEPKDPAREQW 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,325,996
Number of Sequences: 27780
Number of extensions: 276867
Number of successful extensions: 692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)