Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5795
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.99 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.3  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 231 AGSLGPV*GSGRFHHPSTVPGTFTIER 151
           +GS  P  G+GR H P+  P +F I R
Sbjct: 391 SGSSTP--GTGREHDPAKFPPSFRISR 415


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 400 EWGERMRLKVVEGREERKN 456
           E+   +R  V EGR +RKN
Sbjct: 433 EYLNHLRANVAEGRNQRKN 451


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 219 QGIRPLRKCSTKVGQ 263
           QG+R L+ C T VG+
Sbjct: 139 QGLRGLKSCHTGVGR 153


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 219 QGIRPLRKCSTKVGQ 263
           QG+R L+ C T VG+
Sbjct: 139 QGLRGLKSCHTGVGR 153


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 219 QGIRPLRKCSTKVGQ 263
           QG+R L+ C T VG+
Sbjct: 139 QGLRGLKSCHTGVGR 153


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 223 GSGPYENVRQKWDKFLPK 276
           G GP       W++FLPK
Sbjct: 566 GKGPRTTYCAFWNEFLPK 583


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,634
Number of Sequences: 438
Number of extensions: 3623
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)