Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5793
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   0.77 
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   1.4  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   3.1  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   4.1  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    24   7.2  

>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 155 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 283
           YL+ +L    PN  Y    Q A +  +DY   E IRI+E   V
Sbjct: 32  YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 284 GMNNEYRISLAKKGGGCPIMNIHS 355
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 262 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 164
           +D   GH +  PP+ +   +++A + +C  ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 14  FKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSF 121
           F  + S+ P   +LIVN    + +   WT   +D +
Sbjct: 109 FSSVNSLSPSLFQLIVNRMRFDAIHPEWTNGSDDEY 144


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 149 DVYLVANLKPTRPNRCYKFLAQHALRWEED 238
           ++ L+  L P   N+      QH + WEED
Sbjct: 176 NIELLRPLLPYYKNQILNTAKQHGIAWEED 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,328
Number of Sequences: 5004
Number of extensions: 37847
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)