Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5793
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357...    28   3.0  
04_03_0822 - 20054832-20055179,20056794-20056847,20057561-200576...    27   5.3  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    27   7.0  
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278...    27   7.0  
03_02_0200 - 6360682-6362517,6362599-6362670                           26   9.2  
03_01_0605 - 4453409-4453692,4454541-4454594,4454706-4454812,445...    26   9.2  
01_05_0783 + 25183361-25185628                                         26   9.2  

>01_07_0242 +
           42234217-42234320,42234708-42235029,42235377-42235778,
           42235921-42236265,42236785-42236854,42237098-42237173,
           42237309-42237459
          Length = 489

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 248 HEVIRIV-EPSYVGMNNEYRISLAKKGGGCPIMNIHSE 358
           HE ++++ +P   G   EY   +A+  GG PI  I ++
Sbjct: 213 HETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250


>04_03_0822 -
           20054832-20055179,20056794-20056847,20057561-20057657,
           20057752-20057780
          Length = 175

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 221 ERVERGTCSTCWGVWV*GWQRGTRPSHNGRLQWGS 117
           ++VE G  ST +  W   W  G++    GR+QWG+
Sbjct: 24  KKVENGE-STLF--WEDSWWGGSKEGDRGRMQWGA 55


>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
            19906845-19907422,19907506-19908180,19908263-19908653,
            19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 118  LPHCKRPLCDGRVPRCQPQTHTPQQV 195
            LPH  RP+C      C PQ H  Q +
Sbjct: 1043 LPHRHRPVCLFPTTPCPPQHHRTQTI 1068


>05_01_0356 +
           2785410-2785670,2785843-2785960,2786800-2786891,
           2787114-2787176,2787299-2787397,2787726-2787884,
           2788420-2788491,2788567-2788699,2788813-2788877,
           2789016-2789091,2789236-2789337,2789524-2789716,
           2790576-2790654,2792939-2793007,2793261-2793311,
           2793680-2793742,2793926-2794041,2794263-2794347,
           2794898-2794957,2795594-2795639,2796011-2796084,
           2796350-2796400,2796474-2796674,2796747-2796791,
           2797063-2797156,2797226-2797371,2797510-2797739,
           2798136-2798196,2798290-2798347,2799020-2799513
          Length = 1151

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = +2

Query: 95  WTRFVEDSFPIVNDHYV--MDVYLVANLKPTRPNRCYKFLAQHAL-----RWEEDYVPHE 253
           W R+VE    I +  Y   +D+YL  +L    PN  +  L    +     R +E  +  E
Sbjct: 651 WNRYVEAQCCIASHDYKGGLDIYL--DLMQRFPNNVHILLEIAKVEAIIGRNDEAIMNFE 708

Query: 254 VIRIVEPSYVGMNNEYRISLAKK 322
             R+++P+ +   +EY I L  K
Sbjct: 709 KARLIDPNIMTYMDEYAILLKSK 731


>03_02_0200 - 6360682-6362517,6362599-6362670
          Length = 635

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 226 PKSVLSEELVA-PVGACGFEVGNEVHVHHIMVVYNGEAVLNKTGPS 92
           P + L+++L   P G  G EV +     ++ V ++GE +L + G S
Sbjct: 153 PPAFLAKQLTCLPEGCKGAEVLHRAEKSYLSVPHHGEIILQRWGGS 198


>03_01_0605 -
           4453409-4453692,4454541-4454594,4454706-4454812,
           4454865-4454928,4456996-4457896
          Length = 469

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 199 VAPVGACGFEVGNEVHVHHIMVVYNGEAVLN 107
           VA +GAC  E G +VH H  MV  +G++  N
Sbjct: 233 VAVLGACDLESGRQVHGH--MVRNHGDSGSN 261


>01_05_0783 + 25183361-25185628
          Length = 755

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 262 SDYFVGHVVFFPPKSVLSEELVAPVGA 182
           SD+ +GH +  PPKS+   +LV  V A
Sbjct: 528 SDFKLGHYMKIPPKSMFLVKLVGTVVA 554


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,053
Number of Sequences: 37544
Number of extensions: 266100
Number of successful extensions: 713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)