Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5793
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   1.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   8.7  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 65  WSGKEFLRETWTRFVEDSFPIVNDHYVMDV--YLVANLKPTRPNRCYKFLAQHAL-RWEE 235
           WS K FLR  W+      F ++N H   D   ++     P+  ++  +   +H L R+  
Sbjct: 157 WSRKGFLRTRWS-ISGTVFDLINIHLFHDASNFIAMETFPSVYSKTRRRALEHTLDRFHN 215

Query: 236 D 238
           D
Sbjct: 216 D 216


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 206 LAQHALRWEEDYVP 247
           L ++  +WEE Y+P
Sbjct: 225 LVRYVSQWEEVYIP 238


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 143 HNGRLQWGSCPQQNGSKFHAKTLCRSS 63
           HN     GS PQ +GS        R++
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSPAARTT 85


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 324 PFLARLILYSLFMPT*DGSTILITS 250
           P LAR +LY +++ T +   +  T+
Sbjct: 679 PKLARSVLYKIYLNTMESHEVRCTA 703


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 140 YVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEV 256
           +V+D  LV N +P    + + F    +   ++  +PH+V
Sbjct: 141 WVLDSGLVNNTQPMCSPKLFAFDLNTSQLLKQVEIPHDV 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,879
Number of Sequences: 438
Number of extensions: 2732
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)