Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5792
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    29   0.16 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   0.86 
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   1.5  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   2.0  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   3.5  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    24   4.6  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    24   4.6  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           23   8.1  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +1

Query: 115 ACDLARIVHLLLRMEVNRIMILIIFNIAYDEMKILDQNC*LKRLLAS 255
           A + A  +H L++++VN +    IF++  D  K++DQN  ++ +LAS
Sbjct: 575 AVNSAYELHDLVQLDVNTVAC--IFSVDRDTYKVIDQNGGVRTVLAS 619


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 139 AQFSLNRMPFQNKNRNSIGLNVKSYLLNL 53
           A FS +  P +N     + LN  SYLLN+
Sbjct: 317 AFFSSHLRPLENPENQEVLLNAHSYLLNI 345


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 310 IPSKCAPILTMPAVASCSDLPINASTSNFDP 218
           + SK A + ++  VAS S LP+ + +++ DP
Sbjct: 206 VASKKATLSSVSKVASTSSLPVTSVSASVDP 236


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 304 SKCAPILTMPAVASCSDLPINASTSNFDPVFSF 206
           S C+PI   P+  SC +  I+  T N    + F
Sbjct: 294 SHCSPIDARPSTPSCPNASISPKTPNTGDHYGF 326


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 292 PILTMPAVASCSDLPINASTSNFDPVFSFHHR 197
           P+     + S S  P ++STS+   +F  HHR
Sbjct: 7   PLQLNDEINSASFGPASSSTSHSSTIFCVHHR 38


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 136 QFSLNRMPFQNKNRNSIGLNVKSYLLNLIDLEINK 32
           +FS    P  +K      L + SY+L L+ L++ K
Sbjct: 210 EFSAEGSPILDKRDEKTRLELLSYILKLLGLKVPK 244


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 231 LVEAFIGKSLHEATAGIV 284
           LVE + GKSLHEA   ++
Sbjct: 536 LVEYYYGKSLHEAALDLL 553


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 151  VTVGAQFSLNRMPFQNKNRNSIGLNVKSYLLNLIDLEINKYPIYFE 14
            +T  A+ SL+ +     N  SI  +       +ID+ INK P+Y E
Sbjct: 945  ITSLARASLSELLKDTPNYKSIFKSSLDIYHVVIDVNINKLPMYRE 990


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,667
Number of Sequences: 5004
Number of extensions: 21799
Number of successful extensions: 42
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)