Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5792
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1234 - 35127322-35128378,35128423-35128467,35130016-351302...    28   1.3  
04_04_0040 + 22322839-22324173                                         26   7.2  

>02_05_1234 - 35127322-35128378,35128423-35128467,35130016-35130275,
            35130610-35131365,35132115-35132122,35133559-35134327
          Length = 964

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = -2

Query: 142  GAQFSLNRMPFQNKNRNSIGLNVKSYLLNLIDLEINKYPIYFEKKK 5
            G    L R+  +   +N IG +   +LLN+ ++++ ++  +F++K+
Sbjct: 873  GTMLKLERLQVEGLIKNEIGFSGLEFLLNINEVQL-RFEFHFDEKR 917


>04_04_0040 + 22322839-22324173
          Length = 444

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 307 PSKCAPILTMP-AVASCSDLPINASTS 230
           PS  +   T+P + ASCSDLP +  TS
Sbjct: 139 PSSSSTYATVPCSSASCSDLPTSKCTS 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,648,518
Number of Sequences: 37544
Number of extensions: 123111
Number of successful extensions: 194
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)