Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5792
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily ass...    27   2.8  
AL161712-7|CAC70132.1|  235|Caenorhabditis elegans Hypothetical ...    26   4.8  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    26   6.4  
U64852-9|AAB04972.2|  186|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical
           protein B0285.7 protein.
          Length = 781

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 310 IPSKCAPILTMPAVASCSDLPINASTSNFDPV 215
           I  KCA I  +P   + S  P+ +  S F P+
Sbjct: 147 IVEKCAEIQALPVSCTPSQSPLTSDPSKFQPI 178


>U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 340 protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 139 HLLLRMEVNRIMILIIFNIAYDEM 210
           + L+R E N+   L++FNIA+ +M
Sbjct: 283 YFLVRSEFNKFPALVLFNIAWKDM 306


>AL161712-7|CAC70132.1|  235|Caenorhabditis elegans Hypothetical
           protein Y66D12A.10 protein.
          Length = 235

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 130 SLNRMPFQNKNRNSIGLNVKSYLLNLIDLE-INKYPIYFEKKK 5
           ++  MP ++ +R  I  N   Y+  + DLE +NK     E++K
Sbjct: 45  AMRTMPLESADRRKIMANFTDYVRKVADLEYLNKTETTVEQRK 87


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
            protein C32E8.11 protein.
          Length = 1927

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 310  IPSKCAPILTMPAVASCSDLPINASTSN 227
            +P K + ++   A   C  +PI  STSN
Sbjct: 1773 LPEKYSQLINQVATFKCPTIPIEESTSN 1800


>U64852-9|AAB04972.2|  186|Caenorhabditis elegans Hypothetical
           protein W01A11.7 protein.
          Length = 186

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 167 RLTSIRNSRCTILAKSHAISK*EQELHRPERQK 69
           RL+S+ N       K    S  EQE  RPE++K
Sbjct: 23  RLSSLSNQELNQAVKDEKKSFKEQEAERPEKRK 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,959,163
Number of Sequences: 27780
Number of extensions: 122217
Number of successful extensions: 237
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)