Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5791
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s... 44 2e-05
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 27 2.1
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.8
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 26 4.8
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 25 6.4
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 6.4
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 25 6.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.5
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 25 8.5
>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/82 (29%), Positives = 42/82 (51%)
Frame = +1
Query: 244 LNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSV 423
+NG++++Y N L+ + D+ V+ D +F P G L G +N +H+ +
Sbjct: 44 INGIVLAYDNIRFLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGL 103
Query: 424 LVHRVFNVVIPQPTEEPGDKWI 489
L+ +FN IP+ + P D WI
Sbjct: 104 LILGIFNASIPRKS-IPKD-WI 123
>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 181 GNIKESITNLLDYKVGKFDKELNGVLVSYKNPCILQNV--GTIRNDNADIHFQ 333
G + + LD+ VG+ K NGV+ +YK I + V T + D HFQ
Sbjct: 299 GVVSDMFGKPLDFGVGRTLKNNNGVIAAYKG--IFEKVIEATAAVTSKDPHFQ 349
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 113 FANCFNSRRSNFMILDI 63
F NCF +R SN+M+L I
Sbjct: 167 FVNCFKTRLSNWMLLPI 183
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 283 LQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQ 459
L +G I D +F V A I G +G+++KK + + + V NVV+P+
Sbjct: 322 LHQLGYIHRDLKPENFLVGASGHIKLTDFGLS-SGIISKKKIESMKIRLQEVNNVVVPE 379
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/65 (23%), Positives = 35/65 (53%)
Frame = +1
Query: 64 MSKIIKFDLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKE 243
+ ++ ++++ + + N LV K+ + + L L N ES+T+ ++ ++ KFD +
Sbjct: 110 LCRLANLEMQKELSIEVNMNVTLVQKQFLEMVILH---LRNF-ESVTDKMNQRIDKFDGK 165
Query: 244 LNGVL 258
N V+
Sbjct: 166 FNSVI 170
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 315 CGYTFPSSSGLLHISTIH 368
C +TFP+ G +H+S I+
Sbjct: 172 CNFTFPTIQGSIHLSDIN 189
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 73 IIKFDLRELKQLANDKNSCLVVKKITQNLA 162
I+K D+ +K +A K+ CL VK QN++
Sbjct: 317 IMKPDVLFIKSIAVLKSKCLAVKSSLQNIS 346
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
Frame = -3
Query: 154 FV*SFLQPN------KNFCRLPTVLTLVGQIL 77
FV SF +PN +N+CR V+++VG +L
Sbjct: 2195 FVESFPEPNNWVTSRQNYCRTLAVMSIVGYVL 2226
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 298 TIRNDNADIHFQVQADYFIFQPYIGAKLT--GLVNKKCSTHLSVL 426
T RND AD HFQ A+ P +T G++ ++C + L
Sbjct: 512 TGRNDQADFHFQRAAE---INPNNSVLITCIGMIYERCKDYKKAL 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,429
Number of Sequences: 5004
Number of extensions: 45611
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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