Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5791
         (600 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130300-1|AAI30301.1|  338|Homo sapiens TWIST neighbor protein.      107   2e-23
BC130298-1|AAI30299.1|  338|Homo sapiens TWIST neighbor protein.      107   2e-23
BC014574-1|AAH14574.1|  226|Homo sapiens TWISTNB protein protein.     107   2e-23

>BC130300-1|AAI30301.1|  338|Homo sapiens TWIST neighbor protein.
          Length = 338

 Score =  107 bits (258), Expect = 2e-23
 Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 1/165 (0%)
 Frame = +1

Query: 106 LANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKELNGVLVSYKNPCIL 285
           L N + SCLV     +++AL P  L   +  I   LD ++ ++ + L GV ++Y N  ++
Sbjct: 40  LVNSRYSCLVAGPHQRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVV 99

Query: 286 QNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQPT 465
             +G I +D   IH  ++AD+ IF P  G KL G+VNK  S+H+  LVH  FN  IP+P 
Sbjct: 100 GELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFNASIPKPE 159

Query: 466 EEPGDKWIGSSVKEGQEVTFRIAALDLYGALPY-IRGELDERSLK 597
           +   ++W    +  G E+ F +  LD   A  + IRG+L+  SL+
Sbjct: 160 QLSAEQWQTMEINMGDELEFEVFRLDSDAAGVFCIRGKLNITSLQ 204


>BC130298-1|AAI30299.1|  338|Homo sapiens TWIST neighbor protein.
          Length = 338

 Score =  107 bits (258), Expect = 2e-23
 Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 1/165 (0%)
 Frame = +1

Query: 106 LANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKELNGVLVSYKNPCIL 285
           L N + SCLV     +++AL P  L   +  I   LD ++ ++ + L GV ++Y N  ++
Sbjct: 40  LVNSRYSCLVAGPHQRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVV 99

Query: 286 QNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQPT 465
             +G I +D   IH  ++AD+ IF P  G KL G+VNK  S+H+  LVH  FN  IP+P 
Sbjct: 100 GELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFNASIPKPE 159

Query: 466 EEPGDKWIGSSVKEGQEVTFRIAALDLYGALPY-IRGELDERSLK 597
           +   ++W    +  G E+ F +  LD   A  + IRG+L+  SL+
Sbjct: 160 QLSAEQWQTMEINMGDELEFEVFRLDSDAAGVFCIRGKLNITSLQ 204


>BC014574-1|AAH14574.1|  226|Homo sapiens TWISTNB protein protein.
          Length = 226

 Score =  107 bits (258), Expect = 2e-23
 Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 1/165 (0%)
 Frame = +1

Query: 106 LANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKELNGVLVSYKNPCIL 285
           L N + SCLV     +++AL P  L   +  I   LD ++ ++ + L GV ++Y N  ++
Sbjct: 40  LVNSRYSCLVAGPHQRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVV 99

Query: 286 QNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQPT 465
             +G I +D   IH  ++AD+ IF P  G KL G+VNK  S+H+  LVH  FN  IP+P 
Sbjct: 100 GELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFNASIPKPE 159

Query: 466 EEPGDKWIGSSVKEGQEVTFRIAALDLYGALPY-IRGELDERSLK 597
           +   ++W    +  G E+ F +  LD   A  + IRG+L+  SL+
Sbjct: 160 QLSAEQWQTMEINMGDELEFEVFRLDSDAAGVFCIRGKLNITSLQ 204


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,510,149
Number of Sequences: 237096
Number of extensions: 1469040
Number of successful extensions: 2720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2720
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)