Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5791
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73908-4|CAA98127.2|  447|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z70307-6|CAA94332.1|  210|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF067622-5|AAC17544.1|  371|Caenorhabditis elegans Nuclear hormo...    28   5.9  
AC024775-5|AAK68457.3|  259|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z73908-4|CAA98127.2|  447|Caenorhabditis elegans Hypothetical
           protein F53B2.5 protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 154 NLALQPWCLGNIKESITNLLDYKVGKFDKELNGVLVSYKNPCILQNV 294
           N+AL+    G IK  + N L  +    D E+N V +     CI Q V
Sbjct: 29  NIALKEQFYGRIKNGVLNALRNQTLDIDSEVNAVWIITNMCCISQEV 75


>Z70307-6|CAA94332.1|  210|Caenorhabditis elegans Hypothetical
           protein C39E9.6 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 181 GNIKESITNLLDYKVGKFDKELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYF 351
           GN KES TN+L     K+D  L     +Y N C +Q+    +    +++++   D F
Sbjct: 46  GNRKESATNMLKM---KWDSSLEQSAQNYANGCHMQHSTNDKTIGENLYWEWSGDPF 99


>AF067622-5|AAC17544.1|  371|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 15 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 85  DLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYK-VGKFDKE 243
           DL  ++ + N+K S +V K  TQ + +  W L  +  +I   L  + +G  D E
Sbjct: 150 DLTLVEIVKNNKKSRMVTKSATQMITVHDWTLLGLYVTIEMFLSMEFMGSIDNE 203


>AC024775-5|AAK68457.3|  259|Caenorhabditis elegans Hypothetical
           protein Y41D4A.7 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 144 LFYNQTRIFVVCQLF*LS*VKFYDFRHYYKFPNS*ISMRIKLFTSEI 4
           LF   T++FV+  +F  S   F   R   KFP + + MR K+   E+
Sbjct: 3   LFIALTKLFVLILIFSSSSSSFPVSRDLVKFPETYVLMRSKIVDCEV 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,440,794
Number of Sequences: 27780
Number of extensions: 243497
Number of successful extensions: 583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)