Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5788
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58756-10|AAC48087.1|  310|Caenorhabditis elegans Hypothetical p...    29   3.8  
U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    28   6.7  

>U58756-10|AAC48087.1|  310|Caenorhabditis elegans Hypothetical
           protein F58F9.1 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -3

Query: 499 YNLLANTQFEFTITNVYMIRQKLMLILQMLNNSVTYSEIQYK 374
           YN   NT+F+F IT+VY +  +  L    L+N++  S I++K
Sbjct: 82  YNRDNNTEFQFKITDVYALVNEFDL-ADGLSNALESSIIEHK 122


>U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical
           protein F19G12.2 protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -3

Query: 499 YNLLANTQFEFTITNVYMIRQKLMLILQMLNNSVTYSEIQYK 374
           YN   NT+F+F IT+VY +  +  L    L+N++  S I++K
Sbjct: 217 YNRDNNTEFQFKITDVYALVNEFDL-ADGLSNALESSIIEHK 257


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 67   HLSNTFCYK*DTYNFIFSCFCWCM 138
            H S+ F YK    NFI SC  WC+
Sbjct: 1139 HNSDEFAYKEAQENFIRSCAGWCI 1162


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 67   HLSNTFCYK*DTYNFIFSCFCWCM 138
            H S+ F YK    NFI SC  WC+
Sbjct: 1139 HNSDEFAYKEAQENFIRSCAGWCI 1162


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 408  IIQSLILKFNISPE*YKLKWNYLELLL--NIRKARR 307
            I Q +++K   S E    +WN LEL L  N+RKA+R
Sbjct: 1063 ISQEIVIKTKDSTEKLIKRWNQLELDLEENLRKAKR 1098


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 408  IIQSLILKFNISPE*YKLKWNYLELLL--NIRKARR 307
            I Q +++K   S E    +WN LEL L  N+RKA+R
Sbjct: 1063 ISQEIVIKTKDSTEKLIKRWNQLELDLEENLRKAKR 1098


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 408  IIQSLILKFNISPE*YKLKWNYLELLL--NIRKARR 307
            I Q +++K   S E    +WN LEL L  N+RKA+R
Sbjct: 1063 ISQEIVIKTKDSTEKLIKRWNQLELDLEENLRKAKR 1098


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,142,775
Number of Sequences: 27780
Number of extensions: 217102
Number of successful extensions: 471
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)