Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5787
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    28   1.2  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    28   1.5  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    26   6.1  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    25   8.1  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    25   8.1  

>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 349 IQLEVFPIWSIPNIIADLV*SESQESVFRI 260
           IQL  FP W +PN++ D + S    S++ I
Sbjct: 328 IQLNPFPPWDVPNVLEDQMNSLLDGSLYGI 357


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 370 TWKSTWLIQLEVFPIWSIPNIIAD 299
           T+ S W I++  +P+  IP ++AD
Sbjct: 109 TYNSRWKIEIPSYPVREIPYVVAD 132


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 79  IYHWIRNPLRRSGYNRSGLRVNL 11
           IYH +++  +R G + SG+ VNL
Sbjct: 101 IYHTVKHDTKRRGIDVSGVSVNL 123


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 713 DRIP*CLTITGDRVLVTTSKCFIRIQHCS 627
           D IP C  ++G RVL T ++  I +Q  +
Sbjct: 157 DYIPLCARVSGTRVLATMAQGAIAVQRAA 185


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 142 VSSRVQLENSLTLALAIVLRRIYHWIRNPLRRSGY 38
           VSS +  + S  LALA+ + R    + +P+++S Y
Sbjct: 62  VSSLISNDRSQKLALAVSISRFVSGLLDPIQQSQY 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,708
Number of Sequences: 5004
Number of extensions: 54110
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)