Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5787
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   5.0  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.8  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 105 NVSEFSS*TRELTYPFFKRGKTTLVGTCIS 194
           NV +  S TRELT   F      ++  C+S
Sbjct: 72  NVEKLESGTRELTPDDFTEDVHEIIEQCVS 101


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 105 NVSEFSS*TRELTYPFFKRGKTTLVGTCIS 194
           NV +  S TRELT   F      ++  C+S
Sbjct: 72  NVEKLESGTRELTPDDFTEDVHEIIEQCVS 101


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 291 DRSHRSLCSEYRVSSEEKISH 229
           D +  +LC E  +S  +K+SH
Sbjct: 128 DHNISALCKELGISVVQKVSH 148


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 310 C*ECSKLEKPLIESAMSTST 369
           C    KLEKP++ S+ +T++
Sbjct: 312 CPMLQKLEKPVLSSSTTTTS 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,427
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)