Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5785
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 65 7e-12
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 30 0.23
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.40
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 4.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 6.5
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 6.5
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 6.5
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 8.5
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 64.9 bits (151), Expect = 7e-12
Identities = 30/76 (39%), Positives = 41/76 (53%)
Frame = +2
Query: 233 NMRRPDWDSVLLQPFNKNFYDPHSTVLKRSPYEVEESXNKHEVTVSGVEXHNPIQYXEEA 412
N+ + DW + L PF K+FY H V RS EV E + E+ V G+ P+ EEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 413 NFPXYVXQGVKTMGLQ 460
FP YV + VK +G +
Sbjct: 128 GFPNYVLKEVKQLGFE 143
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 444 RQWXYKEPTPIQAQGWP 494
+Q ++ PTPIQ Q WP
Sbjct: 138 KQLGFEAPTPIQQQAWP 154
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 29.9 bits (64), Expect = 0.23
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 456 YKEPTPIQAQGWP 494
YKEPTPIQA WP
Sbjct: 185 YKEPTPIQAATWP 197
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 29.1 bits (62), Expect = 0.40
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 253 PIWASHVLPSKKFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 80
P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 79 HDYFSDLVEDVYLNYGFFLTQG 14
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 4.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 275 KVEVKQNPNLGVACSALQKILFSHQSLQILQI-YCHRCQTKTNYRRIC 135
K E + P + A ++ + H S ++I Y HRC+T+ RIC
Sbjct: 376 KEEEQLAPKIESADLSITPQVTEHDSKPPVRISYDHRCKTRKQSTRIC 423
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/28 (32%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 97 IIPITR-HDYFSDLVEDVYLNYGFFLTQ 17
++P+T+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 145 AEFVASSKFGTT-VSTAIIPITRHDYF 68
A F SS F T V+ ++IPI R+DY+
Sbjct: 448 AFFTVSSLFFTRFVNESLIPILRNDYY 474
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 223 KKFFFPTKASRSSKSIATVAKPRRIIAE 140
KKFF P A + + + KP+R +A+
Sbjct: 621 KKFFMPENALNGFITASALGKPKRALAK 648
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 298 WIIKVFVERLK*NRIPIWASHVLPSKKF 215
W K+F ++ N+I +W +H P + F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -1
Query: 242 VACSALQKILFSHQSLQILQIYCHRCQTKTNYRRICCLLQIWNHRFHGYYSN 87
++ L K S + +QI++ +TK Y + C+ + W FH + +N
Sbjct: 28 ISLGYLSKEKISQEEMQIIRATQKLARTK--YMTLYCIPRAWLIPFHEFLNN 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,394
Number of Sequences: 5004
Number of extensions: 31903
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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