Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5785
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 54 7e-08
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 43 2e-04
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 42 4e-04
08_01_0397 - 3509186-3510291,3510322-3512335 35 0.043
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 29 1.6
07_01_1195 - 11358495-11359079,11359940-11360017 28 3.7
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 28 4.9
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 27 6.5
09_04_0706 + 19627024-19627380,19629945-19629976,19630657-196307... 27 8.6
07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676... 27 8.6
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 27 8.6
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 27 8.6
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 54.0 bits (124), Expect = 7e-08
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +2
Query: 233 NMRRPDWDSVLLQPFNKNFYDPHSTVLKRSPYEVEESXNKHEVTVSGVEXHNPIQYXEEA 412
++ +PD+ S++ PF KNFY V S +V + + ++TV G + P++Y +EA
Sbjct: 104 SLPKPDFRSLI--PFEKNFYVECPAVQAMSDMDVSQYRRQRDITVEGHDVPKPVRYFQEA 161
Query: 413 NFPXYVXQGVKTMG 454
NFP Y Q + G
Sbjct: 162 NFPDYCMQAIAKSG 175
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 456 YKEPTPIQAQGWP 494
+ EPTPIQ+QGWP
Sbjct: 176 FVEPTPIQSQGWP 188
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 266 LQPFNKNFYDPHSTVLKRSPYEVEESXNKHEVTVSGVEXHNPIQYXEEANFPXYVXQGVK 445
L F KNFY +V + EVE + E+TV G + P++ + FP YV Q +
Sbjct: 48 LPRFEKNFYVESPSVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEIT 107
Query: 446 TMG 454
G
Sbjct: 108 KAG 110
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 456 YKEPTPIQAQGWP 494
+ EPTPIQ+QGWP
Sbjct: 111 FVEPTPIQSQGWP 123
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +2
Query: 248 DWDSVLLQPFNKNFYDPHSTVLKRSPYEVEESXNKHEVTVSGVEXHNPIQYXEEANFPXY 427
D ++ +PFNK+FY+ +V S EV + + VSG + PI+ + FP
Sbjct: 170 DHSTIEYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQ 229
Query: 428 VXQGVKTMGLQR 463
+ + G ++
Sbjct: 230 LMNAIAKQGYEK 241
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 34.7 bits (76), Expect = 0.043
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +2
Query: 248 DWDSVLLQPFNKNFYDPHSTVLKRSPYEVEESXNKHEVTVSGVEXHNPIQYXEEANFPXY 427
D + QPF KNFY + K + EV + E+ V G + PI+ ++
Sbjct: 375 DHSKIDYQPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSK 434
Query: 428 VXQGVKTMGLQR 463
+ +K +G ++
Sbjct: 435 LLDTIKKLGFEK 446
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 248 DWDSVLLQPFNKNFYDPHSTVLKRSPYEVEESXNKHEVTVSGVEXHNPIQYXEEANFPXY 427
D + QPF KN Y + + EV E+ V G + PI+ ++
Sbjct: 236 DHSKIEYQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSK 295
Query: 428 VXQGVKTMGLQR 463
+ +K +G ++
Sbjct: 296 LLDTIKKLGFEK 307
>07_01_1195 - 11358495-11359079,11359940-11360017
Length = 220
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 81 LVIGIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNFL 224
+ +G+ VE VV NL N + + G+ ID++++ L +KNFL
Sbjct: 173 IAMGVANVELVVANLLYCFNWQLPK-GMKEEDIDMDEIGQLAFRKNFL 219
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 444 RQWXYKEPTPIQAQGWP 494
+Q + PTPIQAQ WP
Sbjct: 196 QQAGFSAPTPIQAQSWP 212
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 456 YKEPTPIQAQGWP 494
+ PTPIQAQ WP
Sbjct: 170 FSSPTPIQAQSWP 182
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = +2
Query: 296 PHSTVLKRSPYEVEESXNKHEVTVSGVEXHNPIQYXEEANFPXYVXQGVKTMG 454
P + + E ++HE+TV G PI E FP + + ++ G
Sbjct: 117 PAAAAIAADDPSTEAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAG 169
>09_04_0706 +
19627024-19627380,19629945-19629976,19630657-19630751,
19632116-19632281,19632881-19632938,19633014-19633061,
19633274-19633464,19633580-19633702,19635174-19635289,
19635841-19635924,19636009-19636259,19636438-19636647
Length = 576
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -1
Query: 242 VACSALQKILFSHQSLQILQIYCHRCQTKTNYRRICC 132
VAC Q++LF L +YC C T + C
Sbjct: 404 VACLICQELLFDPSVLNCGHVYCMPCLTSVGGEELEC 440
>07_03_1187 +
24667044-24667091,24667196-24667274,24667520-24667695,
24668216-24668766,24669080-24669941
Length = 571
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 78 CLVIGIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNF 221
C++ G+I T+V ++E + A I G+AT I L + LVG F
Sbjct: 182 CVIFGVITSGTIVVWIQENVSWA-IGYGVATACIALALIGFLVGTPIF 228
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 320 SPYEVEESXNKHEVTVSGVEXHN 388
SP +EE N E+ V GV+ HN
Sbjct: 431 SPQMIEEMNNVRELNVEGVKPHN 453
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 320 SPYEVEESXNKHEVTVSGVEXHN 388
SP +EE N E+ V GV+ HN
Sbjct: 431 SPQMIEEMNNVRELNVKGVKLHN 453
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,946,190
Number of Sequences: 37544
Number of extensions: 178373
Number of successful extensions: 439
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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