Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5785
(503 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 44 6e-05
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 33 0.12
AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical ... 30 1.1
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 29 1.4
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical p... 29 2.5
Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical p... 29 2.5
Z48045-7|CAA88098.1| 329|Caenorhabditis elegans Hypothetical pr... 29 2.5
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 29 2.5
U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation fact... 28 3.3
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 28 3.3
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 28 3.3
U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation fact... 28 3.3
U41509-1|AAA82628.2| 163|Caenorhabditis elegans Elongin c prote... 27 5.8
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 44.0 bits (99), Expect = 6e-05
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +2
Query: 236 MRRPDWDSVLLQPFNKNFYDPHSTVLKRSPYEVEESXNKHEVTVSGVEXHNPIQYXEEAN 415
+R DW + L P K+FY ++ V +R YE+++ + ++VT+ G P+ EA
Sbjct: 77 LRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAP 136
Query: 416 FPXYVXQ 436
P + +
Sbjct: 137 LPGQIHE 143
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +2
Query: 248 DWDSVLLQPFNKNFYDPHSTVLKRSPYEVEESXNKHEVTVSGVEXHNPIQYXEEANFPXY 427
D + Q FNKNFY+ H + + +V N + V G++ P+ +F
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKL 275
Query: 428 VXQGVK 445
+ + ++
Sbjct: 276 LMEAIR 281
>AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical
protein Y47A7.1 protein.
Length = 1114
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 16 PASERIHSLNKHLQLNPKNNHVW 84
PAS ++H L++ LQLN N+ W
Sbjct: 773 PASHQLHCLSRALQLNKANDSAW 795
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 102 VETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKN 218
+ETV+ LE N +RL A VA E LE++ GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 157 RRIIAEFVASSKFGTTVSTAIIPI 86
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 157 RRIIAEFVASSKFGTTVSTAIIPI 86
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
>Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 272 VEVKQNPNLGV--ACSALQKILFSHQSLQILQIYCHRCQTKTNYR 144
VE+K NPNL + CS + ++ F+ +S+ C C+ N++
Sbjct: 156 VEIKNNPNLNLQKMCSIIHEVFFTRRSISKNLFDC-GCEIHGNFQ 199
>Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 272 VEVKQNPNLGV--ACSALQKILFSHQSLQILQIYCHRCQTKTNYR 144
VE+K NPNL + CS + ++ F+ +S+ C C+ N++
Sbjct: 156 VEIKNNPNLNLQKMCSIIHEVFFTRRSISKNLFDC-GCEIHGNFQ 199
>Z48045-7|CAA88098.1| 329|Caenorhabditis elegans Hypothetical
protein C41C4.1 protein.
Length = 329
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 245 GVACSALQKILFSHQSLQILQIYCHR-CQTKTNYRRI 138
GVAC F + IL+++ HR C K YRR+
Sbjct: 100 GVACVLYDTGKFMRNNRSILEVWSHRFCGEKNEYRRM 136
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 359 VTVSGVEXHNPIQYXEEANFPXYVXQGVKTMG 454
+++ G P++ EEA FP V Q VK +G
Sbjct: 289 ISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIG 320
>U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation
factor-2 kinase EFK-1B isoform protein.
Length = 760
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = -2
Query: 250 IWASHVLPSKKFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPITRHDY 71
++ +H + + P + + KSI + E S G T ++ P+TRH+
Sbjct: 647 LYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSFAPLTRHEI 706
Query: 70 FSDLVEDVYLNYGFFLTQ 17
+ + E +Y G+ L Q
Sbjct: 707 LAKMAE-MYKEGGYGLNQ 723
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = -2
Query: 250 IWASHVLPSKKFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPITRHDY 71
++ +H + + P + + KSI + E S G T ++ P+TRH+
Sbjct: 655 LYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSFAPLTRHEI 714
Query: 70 FSDLVEDVYLNYGFFLTQ 17
+ + E +Y G+ L Q
Sbjct: 715 LAKMAE-MYKEGGYGLNQ 731
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = -2
Query: 250 IWASHVLPSKKFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPITRHDY 71
++ +H + + P + + KSI + E S G T ++ P+TRH+
Sbjct: 655 LYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSFAPLTRHEI 714
Query: 70 FSDLVEDVYLNYGFFLTQ 17
+ + E +Y G+ L Q
Sbjct: 715 LAKMAE-MYKEGGYGLNQ 731
>U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation factor
kinase protein1, isoform b protein.
Length = 760
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = -2
Query: 250 IWASHVLPSKKFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPITRHDY 71
++ +H + + P + + KSI + E S G T ++ P+TRH+
Sbjct: 647 LYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSFAPLTRHEI 706
Query: 70 FSDLVEDVYLNYGFFLTQ 17
+ + E +Y G+ L Q
Sbjct: 707 LAKMAE-MYKEGGYGLNQ 723
>U41509-1|AAA82628.2| 163|Caenorhabditis elegans Elongin c protein
2 protein.
Length = 163
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 269 EVKQNPNLGVACSALQKILFSHQSLQILQIYCHRCQTKTNYR 144
E+ NP + +A +A + FS ILQ CH KT YR
Sbjct: 96 ELFANPTVDLA-AANNTVYFSDFQSHILQKVCHYLAYKTKYR 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,652,420
Number of Sequences: 27780
Number of extensions: 171730
Number of successful extensions: 513
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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