Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5783
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0618 + 11267444-11267652,11268345-11268399,11269554-11270138     29   3.6  
05_02_0122 - 6840840-6841307                                           29   3.6  
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    28   6.3  
11_06_0344 + 22540436-22540737,22541304-22543545                       27   8.3  
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611...    27   8.3  

>09_02_0618 + 11267444-11267652,11268345-11268399,11269554-11270138
          Length = 282

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 329 LKLLR--AGDWGLQLSPIKRGIPSKRES*ARVDYVPALCTHRPSLLPIE*FSEVFGPT 496
           ++LLR  A D G++  P+      KR+S A   Y P  C H   ++ I   S+ FG T
Sbjct: 112 MRLLRFMASDLGVEQEPLLAAFRGKRQSTALHHYPP--CRHPEKVIGIAPHSDGFGLT 167


>05_02_0122 - 6840840-6841307
          Length = 155

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 465 IGSSDGRCVQRAGT*STRAYDSRLLGIPRFMG 370
           +G+  G C     + ++R Y S L+G+PR +G
Sbjct: 109 VGAGGGGCTSSRASITSRVYFSGLIGLPRSIG 140


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 357 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTS 253
           PQ P    F GLP  +G  +H D  ++A   P  S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311


>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +2

Query: 266 RTRATLKESACSPWPRGPGNPLKLLRAGDWGLQLSPIKRGIPSKRES*ARVDYVPALCTH 445
           R R+  +     PWP G  + +K L A D     S +  G P    S    + +  +C  
Sbjct: 136 RIRSVARSCCSHPWPNGLVHEVKPLGATDSERLFSAVAHGWPRPANSGRVSNEILRVCDG 195

Query: 446 RPSLL 460
            P L+
Sbjct: 196 TPLLI 200


>02_02_0015 +
           6109552-6109650,6110006-6110078,6111937-6111998,
           6112315-6112376,6112463-6112556,6112673-6113227,
           6113379-6113870,6113967-6114137,6115713-6115817,
           6115903-6116052,6116372-6116498,6116585-6116648,
           6117147-6117203,6117423-6117555,6117660-6117746
          Length = 776

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 525 NARRAVKPPRVGPKTSLNHSIGSSDGRCVQ 436
           N  R ++PP    +TS   SIGSS+G   Q
Sbjct: 303 NGTRTIEPPPQMQRTSTASSIGSSEGTSEQ 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,445,501
Number of Sequences: 37544
Number of extensions: 384304
Number of successful extensions: 938
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)