Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5783
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    29   1.8  
AF040644-3|AAP82651.1|  336|Caenorhabditis elegans Gamma-tubulin...    29   1.8  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    29   1.8  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    29   1.8  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   2.4  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   2.4  
U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protei...    29   2.4  
Z68005-4|CAA91992.2|  430|Caenorhabditis elegans Hypothetical pr...    28   4.2  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    28   4.2  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   5.6  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    28   5.6  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    28   5.6  
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    27   7.4  
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    27   7.4  
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    27   7.4  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    27   7.4  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    27   7.4  

>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -3

Query: 540 STSPNNARRAVKPPRVGPKTSLNHSIGSSDGRCVQRAGT*STRAYDSRLLGIPRFMGDNC 361
           S+SP   R A +   +   T    +   +D     RA + S  AYD+R+LG+ R +  N 
Sbjct: 123 SSSPFQRRSASRGRVLSTLTGDQQTPSIADSSSRSRANS-SFTAYDNRMLGMERQLAGNM 181

Query: 360 KPQSPARRSFSGLP 319
             +  +  + +G+P
Sbjct: 182 AQRPRSPYTINGIP 195


>AF040644-3|AAP82651.1|  336|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform c protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -3

Query: 540 STSPNNARRAVKPPRVGPKTSLNHSIGSSDGRCVQRAGT*STRAYDSRLLGIPRFMGDNC 361
           S+SP   R A +   +   T    +   +D     RA + S  AYD+R+LG+ R +  N 
Sbjct: 123 SSSPFQRRSASRGRVLSTLTGDQQTPSIADSSSRSRANS-SFTAYDNRMLGMERQLAGNM 181

Query: 360 KPQSPARRSFSGLP 319
             +  +  + +G+P
Sbjct: 182 AQRPRSPYTINGIP 195


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -3

Query: 540 STSPNNARRAVKPPRVGPKTSLNHSIGSSDGRCVQRAGT*STRAYDSRLLGIPRFMGDNC 361
           S+SP   R A +   +   T    +   +D     RA + S  AYD+R+LG+ R +  N 
Sbjct: 123 SSSPFQRRSASRGRVLSTLTGDQQTPSIADSSSRSRANS-SFTAYDNRMLGMERQLAGNM 181

Query: 360 KPQSPARRSFSGLP 319
             +  +  + +G+P
Sbjct: 182 AQRPRSPYTINGIP 195


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -3

Query: 540 STSPNNARRAVKPPRVGPKTSLNHSIGSSDGRCVQRAGT*STRAYDSRLLGIPRFMGDNC 361
           S+SP   R A +   +   T    +   +D     RA + S  AYD+R+LG+ R +  N 
Sbjct: 123 SSSPFQRRSASRGRVLSTLTGDQQTPSIADSSSRSRANS-SFTAYDNRMLGMERQLAGNM 181

Query: 360 KPQSPARRSFSGLP 319
             +  +  + +G+P
Sbjct: 182 AQRPRSPYTINGIP 195


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 390 GIPRFMGDNCKPQSPARRSFSGLPG-PLGQGEH 295
           GIP   GD+  P  P R    GLPG P G G++
Sbjct: 620 GIPGLKGDHGLPGLPGRPGSDGLPGYPGGPGQN 652


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 390 GIPRFMGDNCKPQSPARRSFSGLPG-PLGQGEH 295
           GIP   GD+  P  P R    GLPG P G G++
Sbjct: 619 GIPGLKGDHGLPGLPGRPGSDGLPGYPGGPGQN 651


>U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protein
           145 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 390 GIPRFMGDNCKPQSPARRSFSGLPGPLGQ 304
           G P   GDN +P +P +  F G PG  GQ
Sbjct: 183 GAPGAPGDNGQPGTPGQDGFPGQPGADGQ 211


>Z68005-4|CAA91992.2|  430|Caenorhabditis elegans Hypothetical
           protein F59F3.2 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
 Frame = -3

Query: 393 LGIPRFMGDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGITDXXXXXXXX 214
           +G+P   GD      PA     G PGP+G    A  + +  V  R      D        
Sbjct: 235 VGLPGARGDPGNNGKPAPPGPEGFPGPVGDLGDAGEYGLRGVPGRRGSPGKDGGYCQCPP 294

Query: 213 LEDA--GPSKKNFNTSSVSCAT-RGRAHLNND 127
            E +    S    N  SV  +T R R   NN+
Sbjct: 295 REGSSFSSSTSTLNRQSVKVSTSRNRLTSNNN 326


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = -3

Query: 405 DSRLLGIPRFMGDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRP 262
           DS   G P   G +  P  P  +   G PG  G  EH +S    R  P
Sbjct: 164 DSGEPGSPGLPGQDAAPGEPGPKGPKGPPGAPGAPEHQESQECPRGEP 211


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = -3

Query: 369 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 274
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 390 GIPRFMGDNCKPQSPARRSFSGLPGPLGQGEHADS 286
           G P   G+N +P +PA+    G PGP G    A S
Sbjct: 146 GAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGS 180


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 390 GIPRFMGDNCKPQSPARRSFSGLPGPLGQGEHADS 286
           G P   G+N +P +PA+    G PGP G    A S
Sbjct: 146 GAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGS 180


>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1759

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 396  LLGIPRFMGDNCKPQSPARRSFSGLPGPLGQG 301
            L GIP   GD+  P  P +    GL G  G G
Sbjct: 1226 LPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMG 1257


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1758

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 396  LLGIPRFMGDNCKPQSPARRSFSGLPGPLGQG 301
            L GIP   GD+  P  P +    GL G  G G
Sbjct: 1225 LPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMG 1256


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
            isoform a protein.
          Length = 1758

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 396  LLGIPRFMGDNCKPQSPARRSFSGLPGPLGQG 301
            L GIP   GD+  P  P +    GL G  G G
Sbjct: 1225 LPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMG 1256


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
            isoform b protein.
          Length = 1759

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 396  LLGIPRFMGDNCKPQSPARRSFSGLPGPLGQG 301
            L GIP   GD+  P  P +    GL G  G G
Sbjct: 1226 LPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMG 1257


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
            protein.
          Length = 1795

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 396  LLGIPRFMGDNCKPQSPARRSFSGLPGPLGQG 301
            L GIP   GD+  P  P +    GL G  G G
Sbjct: 1262 LPGIPGLKGDSGFPGQPGQEGLPGLSGEKGMG 1293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,183
Number of Sequences: 27780
Number of extensions: 286868
Number of successful extensions: 914
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)