Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5782
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 2.3
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 4.0
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 26 4.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.3
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 26 5.3
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha... 25 9.3
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 25 9.3
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra... 25 9.3
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 25 9.3
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 9.3
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 9.3
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 486 LGTPVFLDTITTGPCVT*KEPLPSMTWLEKIPDE 385
L TP F TI T C+T + PS + ++ DE
Sbjct: 67 LSTPAFDKTILTSACITVRSYYPSQPPIVQLLDE 100
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 518 PPRTVYDGLRIDGLVTFAGDELVKGFH 598
PPR V LR+ ++AG ++V FH
Sbjct: 121 PPRLVVYELRLTNFKSYAGTQIVGPFH 147
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 294 WAVCSSAYKGNKKKYARNVQLNSTNLTLR*PHQE--FSLAKSSKVVALFK 437
WAV + A G K+YA + ++ N+ L QE +LAK + VA K
Sbjct: 59 WAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAKELETVAKVK 108
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 75 LEPLRSSTVRFQRSFLPRTIRFWNELPSTVFPE 173
LE R+ R + RT++FWN ST PE
Sbjct: 417 LEFNRACETRLLTCAMDRTVKFWNYEKSTEEPE 449
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 13 YRHLVFTIAPPTTGVEFIRTTWSHCGHPQCVSR 111
Y LVFT GV IR+ W + P ++R
Sbjct: 684 YHELVFTTKSYVRGVSSIRSNWLNAVAPHYLAR 716
>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 294 T*W*VVTVAHGLQQCQGQSQAAAYRLILST 205
T W +V++ HGLQ C + A+ ++ +T
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLVVSAT 230
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 533 YDGLRIDGLVTFAGDELVKGFHSELRKR 616
Y G+ ++ L+ + ++LV FH+ R+R
Sbjct: 25 YRGVELEQLLDLSAEQLVDLFHARARRR 52
>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
translocase complex subunit Tim21 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 606 NSEWKPLTSSSPAKVTNPSIRRPSYTVLGGSI 511
N WK LT+ A T+ +I S + GG +
Sbjct: 51 NKAWKDLTAPQKAYRTSANIGNFSIVIFGGGV 82
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 533 YDGLRIDGLVTFAGDELVKGFHSELRKR 616
Y G+ ++ L+ + ++LV FH+ R+R
Sbjct: 26 YRGVELEQLLDLSAEQLVDLFHARARRR 53
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 585 TSSSPAKVTNPSIRRPSYTVLGGSI*SLSTSKELGT 478
TS+S +K T+P+ + T++ GS+ ST GT
Sbjct: 198 TSASLSKTTSPTAGTITETIVSGSVGYTSTFPASGT 233
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 262 TSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFQNRMVRG 122
TS++P S NTL P L + S +TV + F N + G
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISG 786
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,037
Number of Sequences: 5004
Number of extensions: 68139
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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