Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5781
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 27 1.3
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 27 1.7
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 3.0
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 25 5.3
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch... 25 7.0
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 24 9.3
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 24 9.3
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom... 24 9.3
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 24 9.3
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 24 9.3
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 315 HLGTSSGGHGPLSNPSLAPNGSTSLL 392
H+G ++ ++ PS+ PNG+TS+L
Sbjct: 237 HMGATNMTVDNMNKPSIPPNGNTSIL 262
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 146 VDVYGLQ*PFNTRWSVSSSNHLSKKKGVILDPVDRMVNSRRRPKHVIKGPP 298
+DV+ + P N +WS S + ++ + GV + + K VI P
Sbjct: 74 IDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 254 VNSRRRPKHVIKGPPRSINGAFRYLKRRSRS 346
++S + P+H + PRS N + + R RS
Sbjct: 824 ISSTKSPQHKLSDQPRSRNNSISNVSHRERS 854
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 5.3
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +2
Query: 146 VDVYGLQ*PFNTRWSVSSSNHLSKKKGVILDPVDRMVNSRRRPKHVIKGPP 298
+DV+ + P + +WS S ++++ + GV + + K VI P
Sbjct: 74 IDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124
>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 306 LTVHLGTSSGGHGPLSNPSL 365
L VH+ ++GG PLSNP L
Sbjct: 129 LRVHIMWTTGGDLPLSNPVL 148
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 170 PFNT-RWSVSSSNHLSKKKGVILDPVD 247
PFN ++VSSS+ + KKKG + + ++
Sbjct: 574 PFNVPSFTVSSSDQVQKKKGNVPNAIE 600
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -2
Query: 198 ELTDHLVLNGYWSP*TSTT*MRHSQYSYN 112
EL V GYW P T + Y YN
Sbjct: 103 ELYGSYVWQGYWQPEYETANTNNESYIYN 131
>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 375
Score = 24.2 bits (50), Expect = 9.3
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +2
Query: 128 EWRIYVVDVYGLQ*PFNTRWSVSSSNHLSKKKGVILDPVDRMVNSRRRPKHVIKGPPRSI 307
+W + +YG+ PF +S + + V + P ++V++ KHV KG P
Sbjct: 216 DWLRAGIMLYGIS-PF-----LSKNKDSKTPESVNIKPAMKLVSTIISVKHVDKGQPIGY 269
Query: 308 NGAFRYLKRRSRSL 349
G RY+ R L
Sbjct: 270 GG--RYVATRDMKL 281
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 24.2 bits (50), Expect = 9.3
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 399 MGLINSSSHWAQATGSTRDRDRRLRYLNAPLMDRGGPLITCLGRRRLFTIRSTGSS 232
MG+ S H ATG+ R + R+ R + R P T +G +R+ +R G +
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFE---LGR-QPSNTRIGPKRIHEVRVRGGN 52
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 24.2 bits (50), Expect = 9.3
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 399 MGLINSSSHWAQATGSTRDRDRRLRYLNAPLMDRGGPLITCLGRRRLFTIRSTGSS 232
MG+ S H ATG+ R + R+ R + R P T +G +R+ +R G +
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFE---LGR-QPSNTRIGPKRIHEVRVRGGN 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,425
Number of Sequences: 5004
Number of extensions: 44543
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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