Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5781
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0441 + 17936209-17936428,17936896-17937116,17938250-17938864 32 0.18
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 30 0.74
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 30 0.74
06_01_0842 + 6383033-6383430,6383548-6383627,6383974-6384085,638... 29 2.3
06_01_0131 + 1015825-1016112,1017480-1017653,1018013-1018105 28 3.9
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642... 28 3.9
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 28 3.9
11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961 27 9.1
08_02_1301 - 25977012-25978037 27 9.1
01_06_1037 + 33990358-33991263 27 9.1
>10_08_0441 + 17936209-17936428,17936896-17937116,17938250-17938864
Length = 351
Score = 32.3 bits (70), Expect = 0.18
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -2
Query: 357 GSTRDRDRRLRYLNAPLMDRGGPLITCLGRRRLFTIRSTGSSMTPFFLLRWLDELTDHLV 178
GST D L + PL D P TCL R +T + + +T +++R ++ +
Sbjct: 176 GSTESEDEDLSFFTVPLTDVNRPRETCLITRE-YTSKLSTLELTFGYVVRSVEATIKARI 234
Query: 177 LNGYW 163
++G W
Sbjct: 235 VDGSW 239
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 30.3 bits (65), Expect = 0.74
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 384 SSSHWAQATGSTRDRDRRLRYLNAPLMDRGGPLITCLGRRRLFT-IRSTGSSMT 226
S HW T S R R RR+ L+ P GP+ LG + +R T +++T
Sbjct: 67 SFCHWLGVTCSRRRRHRRVTGLSLPHTPLHGPITPLLGNLSFLSFLRLTDTNLT 120
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 30.3 bits (65), Expect = 0.74
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -1
Query: 358 GFDKGP*PPLEVPKCTVNGSGRTLNYVFRATSTVYHSVHRIEYDTFFFA*MVGR 197
G+D+G PP KC G+ T Y+ + H+ Y T + A G+
Sbjct: 201 GYDQGTNPPKRCTKCAAGGNSATEPYIVAHNFLLSHAAAVARYRTKYQAAQQGK 254
>06_01_0842 +
6383033-6383430,6383548-6383627,6383974-6384085,
6384355-6384454,6384682-6384744,6385857-6386011,
6386109-6386286,6386787-6386954
Length = 417
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -2
Query: 426 AKKLSGLC----AMGLINSSSHWAQATGSTRDRDRRLRYLNAPLMDRGG 292
A +LS LC A+ + + S + +G R D RY+N P DRGG
Sbjct: 103 AYELSVLCDIDIALLMFSPSGRLSHFSGRRRIEDVLTRYINLPESDRGG 151
>06_01_0131 + 1015825-1016112,1017480-1017653,1018013-1018105
Length = 184
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 317 FRYLKRRSRSLVEPVACAQWLDEFINPI 400
F +R++RSL + + QWLD+ PI
Sbjct: 48 FSISRRKNRSLAQAIESGQWLDDQALPI 75
>05_05_0020 -
21560896-21561352,21563399-21563480,21564143-21564263,
21564424-21565074,21565206-21565338,21565677-21565728,
21566115-21566244,21567241-21567300,21567444-21567536,
21567795-21567919,21568263-21568353,21568828-21569127,
21569415-21570038
Length = 972
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 363 ATGSTRDRDRRLRYLNAPLMDRG 295
ATG TR RD L + +PL+D G
Sbjct: 337 ATGKTRARDAALNAIQSPLLDIG 359
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 27.9 bits (59), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 230 ILDPVDRMVNSRRRPKHVIKGPP 298
I+D +DR+ N R P ++ GPP
Sbjct: 58 IVDTIDRLTNENRLPHLLLYGPP 80
>11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961
Length = 384
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 370 GASDGFDKGP*PPLEVPKCTVNGSGRTLNYVFRATSTVYHS 248
G+SD + P PP + T + + +TLNY + S++ H+
Sbjct: 245 GSSDAIAEPPAPPSPLIYTTPHPNYQTLNYNINSNSSMPHA 285
>08_02_1301 - 25977012-25978037
Length = 341
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 284 IKGPPRSINGAFRYLKRRS 340
+ G PR GAFR+L RRS
Sbjct: 95 VPGHPRGYGGAFRHLVRRS 113
>01_06_1037 + 33990358-33991263
Length = 301
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 325 PQAAVTVPCRTRRLRPMARRV 387
PQA T C +RR+R +A RV
Sbjct: 68 PQAVCTAACVSRRMRAVAERV 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,195,722
Number of Sequences: 37544
Number of extensions: 323374
Number of successful extensions: 740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -