Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5781
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    29   1.2  
AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical ...    29   1.2  
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot...    28   3.6  
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot...    28   3.6  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   3.6  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   3.6  

>AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 397 GVNKLVEPLGASDGF-DKGP*PPLEVP 320
           G+++ +E  G +DGF D+ P PPLE P
Sbjct: 241 GIDEQIEGAGGNDGFFDEPPSPPLENP 267


>AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical
           protein Y24D9B.1 protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 397 GVNKLVEPLGASDGF-DKGP*PPLEVP 320
           G+++ +E  G +DGF D+ P PPLE P
Sbjct: 241 GIDEQIEGAGGNDGFFDEPPSPPLENP 267


>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
            protein.
          Length = 2693

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 233  LDPVDRMVNSRR----RPKHVIKGPPRSINGAFRYLKRRSRSLVEPVACAQWLDEFI 391
            LD V   +NSR     RPK ++K  PR +   ++ L+ ++     P+    W  E I
Sbjct: 2150 LDEVRAAINSRNKRVCRPKFMVKPKPRKVLEEYKSLRLKTAISGNPMPQVHWDKEGI 2206


>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
            protein.
          Length = 2708

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 233  LDPVDRMVNSRR----RPKHVIKGPPRSINGAFRYLKRRSRSLVEPVACAQWLDEFI 391
            LD V   +NSR     RPK ++K  PR +   ++ L+ ++     P+    W  E I
Sbjct: 2165 LDEVRAAINSRNKRVCRPKFMVKPKPRKVLEEYKSLRLKTAISGNPMPQVHWDKEGI 2221


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 233   LDPVDRMVNSRR----RPKHVIKGPPRSINGAFRYLKRRSRSLVEPVACAQWLDEFI 391
             LD V   +NSR     RPK ++K  PR +   ++ L+ ++     P+    W  E I
Sbjct: 17976 LDEVRAAINSRNKRVCRPKFMVKPKPRKVLEEYKSLRLKTAISGNPMPQVHWDKEGI 18032


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 233   LDPVDRMVNSRR----RPKHVIKGPPRSINGAFRYLKRRSRSLVEPVACAQWLDEFI 391
             LD V   +NSR     RPK ++K  PR +   ++ L+ ++     P+    W  E I
Sbjct: 17991 LDEVRAAINSRNKRVCRPKFMVKPKPRKVLEEYKSLRLKTAISGNPMPQVHWDKEGI 18047


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,615,312
Number of Sequences: 27780
Number of extensions: 258398
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)