Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5780
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   216   1e-56
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  216 bits (527), Expect = 1e-56
 Identities = 105/182 (57%), Positives = 126/182 (69%)
 Frame = +1

Query: 82  ARPLVSVYSEKSETVQGAAIPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 261
           ARPLV+VY EK E  Q + I LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQ-SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 262 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 441
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH          
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121

Query: 442 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 621
                          QARGH+I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI K
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEK 181

Query: 622 VY 627
           VY
Sbjct: 182 VY 183


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +1

Query: 214 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 384
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 385 PTKP 396
             KP
Sbjct: 197 APKP 200


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -1

Query: 519 GDLFNNVSSSLNERWDAGSSNGCCQGRSPLSEVDATVPAPP 397
           GDL + +S +L+ R  A   NG  + + P ++V +T+PAPP
Sbjct: 452 GDLMSALSKALDARRKA--INGKVEAQPP-AKVSSTIPAPP 489


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 279 YRTCCRPNSSCPWWWYP*VRSGC--LR*HVSWWTYVRPH 389
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 182 RSGRMGALNTNGRGMAAPCTVSLFSEYTDTK--GRATDRL 69
           R  R+ A+    RGMA+P T +L     D K  GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 182 RSGRMGALNTNGRGMAAPCTVSLFSEYTDTK--GRATDRL 69
           R  R+ A+    RGMA+P T +L     D K  GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 130 PAPSRSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 29
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,528
Number of Sequences: 27780
Number of extensions: 314469
Number of successful extensions: 909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)